LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g01102	ATGCCGCCTCATTTGTTCACTGGGGGAAAGGTTGAGGGAGAGCAAGGATCTGCAATCCATGTTGTGTTAATGGATCCCAACAGTGGCAGTGTGGTTCATGTTGGACCAGAATCTGTTGCGAAATTGAATGTGGTGGTACTTGAAGGTGACTTCAATGAGGAAGTGGATGATGATTGGACAAAAGAGCACTTTGAAGGGCATGAAGTAAAGGAGCGTGATGGGAAAAGGCCACTTCTAACTGGAGATTTGCAGGTTACTCTGAAGGAAGGGGTAGGAACCTTAGGTGATCTTACTTTCACTGACAATTCTAGCTGGATAAGAAGCAGAAAATTCCGGCTTGGTGTTAAGGTTGCTCCTGGTTATTGCGAGGAGATTCGTATTCGTGAGGGAAAGACTGAAGCCTTTGCAGTTAAAGATCACAGAGGAGAACTATACAAGAAACATTATCCACCTGCTTTGAATGATGAAGTTTGGAGATTGGATCGGATAGCTAAGGATGGGGCACTTCACAAAAAGTTGATTCAAGCAAAAATAGTAACTGTAGAAGATTTCCTACGACTTCTTGTCCGCGAGCCACAGAAGTTAAGAAGTATACTCGGTAGTGGAATGTCCAACAGAATGTGGGAGAGTACTGTGGAGCATGCCAAGACATGTGTCTTGGGTGGCAAGCTCTTTGTTTACTACACCGACGAAACCAATGCCGCTGGCATTGTATTCGACCATATATACCAGCTGAGAGGCCTCATTGCAGATGGCCAATTCTTCTCTTTGGAATCACTCACTCCAAATCAGAAGATGTCTGTGGATTCCCTGGTGAAGAAAGCATATGACAATTGGGAGCAAGTTGTAGAATATGATGGAAAAGTTTTAAATTCGCTCACTAATTCAAAAAAGGGATCAAGAGCTTTAGCCACTCAGATAATGAACCATAACAGTTTCCCAGAGCAGCAGTATTCCTCAGCAAAGAACAAGGTCTCATATGTCTCCTCTGAACCAAACCAACACTCGCAGATAACAAATAACTACTCAGCAAGTCCCGGTTTGGCAGACTATCTATTCGGGAGATCTGACAATCAGATGGTAGGCACATCTTTAACTGACTCTCAGATATCATTGAATGGCAGCATGAACTACATAACAGGTGAAAATCATGACAATGGTGGTGCTTATTTCGCTGGAGATTGGTCCCGACCAAGAAGTGGACAAGGGTTGGAAGACATTGTGGCAGAAGAACTCCGTCTGAGGAGTTCAGAGATGTTGGAGAGTGATGATATGCAGAGGTTACTTAAGACAATCAATGGTGGTCATTCTAATGAGGGTTGTTACACCTATAGCCTTCAGTATGAGCCTCAGATGTATCATTCATTCGGTGAGGATCAGGGAAAGCCTTCAGGGAAAGCTGTAGTGGGGTGGCTTAAGCTCAAAGCTGCTTTAAGGTGGGGCATTTTTATCAGAAAAAAAGCTGCAGAAAGGAGAGCACAACTCACTGAACTGAATTGA	1500	0.438	MPPHLFTGGKVEGEQGSAIHVVLMDPNSGSVVHVGPESVAKLNVVVLEGDFNEEVDDDWTKEHFEGHEVKERDGKRPLLTGDLQVTLKEGVGTLGDLTFTDNSSWIRSRKFRLGVKVAPGYCEEIRIREGKTEAFAVKDHRGELYKKHYPPALNDEVWRLDRIAKDGALHKKLIQAKIVTVEDFLRLLVREPQKLRSILGSGMSNRMWESTVEHAKTCVLGGKLFVYYTDETNAAGIVFDHIYQLRGLIADGQFFSLESLTPNQKMSVDSLVKKAYDNWEQVVEYDGKVLNSLTNSKKGSRALATQIMNHNSFPEQQYSSAKNKVSYVSSEPNQHSQITNNYSASPGLADYLFGRSDNQMVGTSLTDSQISLNGSMNYITGENHDNGGAYFAGDWSRPRSGQGLEDIVAEELRLRSSEMLESDDMQRLLKTINGGHSNEGCYTYSLQYEPQMYHSFGEDQGKPSGKAVVGWLKLKAALRWGIFIRKKAAERRAQLTELN	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g01102	499	Pfam	Calmodulin binding protein C-terminal domain	223	285	IPR046829	-
	Viun9g01102	499	Pfam	Calmodulin binding protein-like N-terminal domain	3	140	IPR046831	-
	Viun9g01102	499	Pfam	Calmodulin binding protein central domain	152	218	IPR046830	-
	Viun9g01102	499	PANTHER	OS02G0177800 PROTEIN	2	425	IPR012416	GO:0005516

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g01102	Viun-Chr9	9001342	9004306	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g01102	1	499	Calmodulin-binding Proteins	AT2G24300	61.479	0.0	615

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g01102	-		-	gmx:100775528	918.302