Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01090 ATGGCTCTCTTCCGAAGGTTCTTTTACCGGAAACCACCCGATCACCTCCTCGAGATCTCCGACAGACTCTATGTTTTTGATTGTTGCTTCTCCAAGAATGTGTTGGAGGAAGAGGAGTACAAGGTTTATATTGGGGGGGTTTTGGGTCAGCTACAGGATCACTATCCGGATGCTTCTTTCATGGTGTTCAATTTCAGAGAAGGGGATAGGCGCAGTCGAATTTCAGACATAATGTCTCAGTATGAGATGACAGTTATGGAGTACCCTCGGCAATATGAGGGTTGTCCCCTTTTGCCTCTGGAGATGATTCACCACTTCCTTCGGTCAAGTGAGAGCTGGTTGTCTTTGGAGGGCCAACAAAACGTGCTTTTGATGCACTGTGAAAGGGGTGGTTGGCCTGTGCTTGCGTTTATGCTAGCTGGTCTTCTGTTGTACAGGAAACAGTACAATGGGGAACACAAAACTCTTGAAATGGTGTACAAGCAAGCACCTAGAGAACTTCTCCATCTCCTATCCCCTTTGAATCCACAACCCTCTCATTTGAGATATCTTCAGTACATTTCAAGGAGGCATTTGGGTTCTCAGTGGCCTCCTTCAGAAACACCCTTATATTTGGATTGCATTATTCTGAGGGTCCTTCCATTGCTTGACGGTGGAAAAGGATGCAGACCGGTTGTGCGTGTCTATGGTCCAGACCCTTCAAAACCTTCCAACCGAAGTTCTAAGCTTCTTTCCTCAACTTCAATGGGCCAAAATCATGTTCGTCACTACATGCAGGCAGAATGTATGCTCGTGAAAATTGACATCCGTTGTCATGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAAGTGATGATTTTGTTGGTGAGGAGGTGATGTTCAGAGTCATGTTTCATACTGCGTTTGTACGGTCAAATATACTGACGCTGAGCCGCGATGAAATTGATATTCAGTGGGATGCAAAGGATCACTTCCCCAAGGACTTCAAATTTGAGGTGCTTTTTTTGGACGCTGATGCTGTTATGCCTAATCTAAACACAGTCGATGCGAGTGAAGATGCTAGTGACACAGAATGTGCTTCACCTGAGGCTGAGGAGTTCTATGAAGCAGAAGAGATCTTCAGCAATGTAATTGATGTACTGGAAGGTAAGGGAGATTATGATTTTCCAATGGTTCATGACAGTGGAGTGGATGATGGAAGTCATACAGAGATCTGGAAAGAGTATTCAGATCCTCATACTTTTCTGGATTCCATGTTAGATGATGGGATTCACCAACAGGTTGATGATACGAGGTACAAGCTTGACAAGAGGGTGGTTTTAGATACTCATGCTGTCAAAGATATTGGAGTGGATTATGGAGTAACTTTCATGACAAAGGAAGTCACTGTGAATGCTCTTGATAAGTTGGCAGTTAAGCAAAACAAATATGGCGAAGAGAACAACAAAACGGAAGAAGAGTTAGATTCAGAAGCAGGGCTGCAGGTGCTTGATATTTCCAGACCAAAATCTGATAAATTACTTATTTCTTCTCAAAAGAAACATCTTCCTTCAAACTCAAAGCCCATGCAAGAACCACATGGTTTTCAGGCACATTATGCAAAACCCAATGTAACAACTAGGTCGGTTCCTTCTAGTAAGGGTGCTTCTCAAGATTCCATGCATGTCTCATATCCACTATCAAGGAACAATAGTTCACCACTTAGATTGTCATATGTTACCTCTGAAAAGGAGGAAATTATTGCCAAAGGAAAATCTACTTCTAGTTCTCATGTCTCTGAAGCAATTGCTTTTACGGACACGATAAATGACCCGAAAAGCTGTCATGGTGATAACTCAAAATCTTCAAACATTGTACCTGAAATAGGCTCAAACTCTCCACTATTATCATTACTGTCAGTCAAAGAGACATCTCTTCAGTTAGCTAATCAAGCACCACAACAGAGCTATGGTCAAATGTTACAACTTCATCCACCTCCACCTCCTCCTCCACCTCCAGGTTTTGGGCAAAATACCCATTGGAAATCTGTTGGACAAAACAATGGAGCTTTACCTACTTCTCCTCATTCTCCTCCCATTGCAAATGGTGTAATTCCACCAAAAGTTTCACTACCACCACCACCACCTCCTCCCCCTCCTCCTCCTCCCCCTCCTTTGCAGTCTACAAATGAACCCTCCCTCCCTTCTCCCTCAATATCTCCAACAACGTTTAAAGCTCCACCTCCTGCACCCCGACCACCACATTATCCTCCACCTCCTTTAAGCAAATCTACACCACTTCCTCCTCCTCCTTTAAGTACTGCTCCACCACCGCCACCTCCTCCTCCTTCTTTATCCAGAGGTTCACCTCCCCCACCACCTCTTCCTCCATCAAGTGGAGCACCACCTCCACCATCATCTTCTTCACTGTCCAGAGCTCCACCTCCTCCACCTCCACCAAATCGTGGACCACCACCACCAACAATGCCTGGAGGCACAGCTCCTCCACCACCTCCAGGTGGTCGAGGACAACCTCCTACTGGAACACGAGCTCCTCTTGCTCATTCTCCTCATGTACCTCTTGGTGGTGCTACTTTTCCTTCAGCAATTGGAACTGATACAAGAGGGAAAGGTCGTGGACTTGGACGTCCTACAGGGTCTGGTGCCATGGGAACTCGGAAATCCTCCTTAAAGCCTCTGCATTGGAGTAAGGTAACAAGAGCATTGCAAGGAAGTTTATGGGATGAACTACAAAGACGTGGAGAGCTTCAAATAACACAAGAGTTTGACGTTTCAGAGATAGAGAAGCTTTTTTCTGCAAATGTTCCGAAACCTGCTGATTCAGATGGTAAATCTGGTGGGCGGCGCAAATCTGTTGGATCCAAAGCTGACAAAATCCACTTGATTGACCTAAGGAGGGCCAATAATACTGAAATTATGCTCACAAAGGTTAAGATGCCTCTTCCTGATATGATGGCTGCAGTACTGGCTATGGATGATTCAGTGTTAGATGTTGATCAGGTGGAAAATCTCATTAAATTTTGTCCAACCAAAGAGGAGATAGAGCTTTTAAAGGGATACACCGGTGATAAGGAGAATTTGGGGAAGTGTGAAAAGTATTTTTTAGAGCTGATGAAAGTGCCAAGAGTGGAGTCAAAACTTAGAGTATTCTCTTTCAAAATTCAGTTTGGGACTCAGATTACAGAGTTTAAGAAGAGTTTACAAACAGTCAACTCTGCTTGTGAAGAGGTCCGAAATTCATTCAAACTAAAGGAGATCATGAAGAAAATTCTTTATTTGGGTAATACATTGAATCAAGGAACAGCAAGGGGATCTGCTGTTGGATTCAAGTTAGATAGTCTCTTAAAACTAACCGACACTCGTGCTTCAAATAGTAAAATGACACTAATGCATTTTCTTTGCAAGGTCCTAGCTGAAAGGTTTCCTGGACTCCTTGATTTTCACCTTGACCTTGTTAGCTTGGAAGCAGCCACTAAGATACAATTGAAGTCATTAGCAGAAGAAATGCAAGCAATCATCAGGGGATTAGAAAAGGTTAAACAGGAGCTTGCTGCATCTGAAAAGGATGGCCCAGTGACTGAAGTTTTTCGTAAGACATCGAAGGAATTCATTGCTGTTGCAGGGTCCGAGGTGGCATCTGTAACAAACCTGTATTCTGTGGTGGGAAGAAATGCAGATGCACTTGCCCTATATTTTGAAAAGCAGAGGATGAGAAAGGAGAGTAGACAAGGAAAGGAGGACACACTTTACTACAACTCTCTTGAATTTCACAAGGTTGTTTCTGAAGGCACATGA 3798 0.4379 MALFRRFFYRKPPDHLLEISDRLYVFDCCFSKNVLEEEEYKVYIGGVLGQLQDHYPDASFMVFNFREGDRRSRISDIMSQYEMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEHKTLEMVYKQAPRELLHLLSPLNPQPSHLRYLQYISRRHLGSQWPPSETPLYLDCIILRVLPLLDGGKGCRPVVRVYGPDPSKPSNRSSKLLSSTSMGQNHVRHYMQAECMLVKIDIRCHVQGDVVLECIHLSDDFVGEEVMFRVMFHTAFVRSNILTLSRDEIDIQWDAKDHFPKDFKFEVLFLDADAVMPNLNTVDASEDASDTECASPEAEEFYEAEEIFSNVIDVLEGKGDYDFPMVHDSGVDDGSHTEIWKEYSDPHTFLDSMLDDGIHQQVDDTRYKLDKRVVLDTHAVKDIGVDYGVTFMTKEVTVNALDKLAVKQNKYGEENNKTEEELDSEAGLQVLDISRPKSDKLLISSQKKHLPSNSKPMQEPHGFQAHYAKPNVTTRSVPSSKGASQDSMHVSYPLSRNNSSPLRLSYVTSEKEEIIAKGKSTSSSHVSEAIAFTDTINDPKSCHGDNSKSSNIVPEIGSNSPLLSLLSVKETSLQLANQAPQQSYGQMLQLHPPPPPPPPPGFGQNTHWKSVGQNNGALPTSPHSPPIANGVIPPKVSLPPPPPPPPPPPPPPLQSTNEPSLPSPSISPTTFKAPPPAPRPPHYPPPPLSKSTPLPPPPLSTAPPPPPPPPSLSRGSPPPPPLPPSSGAPPPPSSSSLSRAPPPPPPPNRGPPPPTMPGGTAPPPPPGGRGQPPTGTRAPLAHSPHVPLGGATFPSAIGTDTRGKGRGLGRPTGSGAMGTRKSSLKPLHWSKVTRALQGSLWDELQRRGELQITQEFDVSEIEKLFSANVPKPADSDGKSGGRRKSVGSKADKIHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDDSVLDVDQVENLIKFCPTKEEIELLKGYTGDKENLGKCEKYFLELMKVPRVESKLRVFSFKIQFGTQITEFKKSLQTVNSACEEVRNSFKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHFLCKVLAERFPGLLDFHLDLVSLEAATKIQLKSLAEEMQAIIRGLEKVKQELAASEKDGPVTEVFRKTSKEFIAVAGSEVASVTNLYSVVGRNADALALYFEKQRMRKESRQGKEDTLYYNSLEFHKVVSEGT 1265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01090 1265 PANTHER FORMIN-J 1 743 - -
Viun9g01090 1265 Pfam Formin Homology 2 Domain 886 1237 IPR015425 -
Viun9g01090 1265 PRINTS Proline rich extensin signature 753 778 - -
Viun9g01090 1265 PRINTS Proline rich extensin signature 711 727 - -
Viun9g01090 1265 PRINTS Proline rich extensin signature 730 747 - -
Viun9g01090 1265 PRINTS Proline rich extensin signature 659 675 - -
Viun9g01090 1265 PRINTS Proline rich extensin signature 689 710 - -
Viun9g01090 1265 MobiDBLite consensus disorder prediction 656 670 - -
Viun9g01090 1265 MobiDBLite consensus disorder prediction 673 689 - -
Viun9g01090 1265 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Viun9g01090 1265 Gene3D Formin, FH2 domain 883 1261 IPR042201 -
Viun9g01090 1265 MobiDBLite consensus disorder prediction 645 889 - -
Viun9g01090 1265 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 188 IPR029021 -
Viun9g01090 1265 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Viun9g01090 1265 MobiDBLite consensus disorder prediction 539 566 - -
Viun9g01090 1265 Gene3D Protein tyrosine phosphatase superfamily 13 206 IPR029021 -
Viun9g01090 1265 MobiDBLite consensus disorder prediction 693 725 - -
Viun9g01090 1265 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Viun9g01090 1265 CDD PTP_PTEN-like 16 190 - -
Viun9g01090 1265 Coils Coil 468 488 - -
Viun9g01090 1265 Gene3D - 207 336 - -
Viun9g01090 1265 ProSiteProfiles Formin homology-2 (FH2) domain profile. 881 1265 IPR015425 -
Viun9g01090 1265 SMART it6_source 660 1265 IPR015425 -
Viun9g01090 1265 Coils Coil 1163 1190 - -
Viun9g01090 1265 SMART PTEN_C2_2 198 338 IPR014020 -
Viun9g01090 1265 MobiDBLite consensus disorder prediction 935 954 - -
Viun9g01090 1265 MobiDBLite consensus disorder prediction 735 839 - -
Viun9g01090 1265 SUPERFAMILY Formin homology 2 domain (FH2 domain) 958 1234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01090 Viun-Chr9 8869897 8882624 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01090 1 572 FH2 protein (formin) Gene Family AT5G07740 58.638 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01090 - - pvu:PHAVU_009G184800g 1207.97