Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01087 ATGGCTCTCTTCCGAAGGTTCTTTTACCGGAAACCACCCGATCACCTCCTCGAGATCTCCGACAGACTCTATGTTTTTGATTGTTGCTTCTCCAAGAATGTGTTGGAGGAAGAGGAGTACAAGGTTTATATTGGGGGGGTTTTGGGTCAGCTACAGGATCACTATCCGGATGCTTCTTTCATGGTGTTCAATTTCAGAGAAGGGGATAGGCGCAGTCGAATTTCAGACATAATGTCTCAGTATGAGATGACAGTTATGGAGTACCCTCGGCAATATGAGGGTTGTCCCCTTTTGCCTCTGGAGATGATTCACCACTTCCTTCGGTCAAGTGAGAGCTGGTTGTCTTTGGAGGGCCAACAAAACGTGCTTTTGATGCACTGTGAAAGGGGTGGTTGGCCTGTGCTTGCGTTTATGCTAGCTGGTCTTCTGTTGTACAGGAAACAGTACAATGGGGAACACAAAACTCTTGAAATGGTGTACAAGCAAGCACCTAGAGAACTTCTCCATCTCCTATCCCCTTTGAATCCACAACCCTCTCATTTGAGATATCTTCAGTACATTTCAAGGAGGCATTTGGGTTCTCAGTGGCCTCCTTCAGAAACACCCTTATATTTGGATTGCATTATTCTGAGGGTCCTTCCATTGCTTGACGGTGGAAAAGGATGCAGACCGGTTGTGCGTGTCTATGGTCCAGACCCTTCAAAACCTTCCAACCGAAGTTCTAAGCTTCTTTCCTCAACTTCAATGGGCCAAAATCATGTTCGTCACTACATGCAGGCAGAATGTATGCTCGTGAAAATTGACATCCGTTGTCATGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAAGTGATGATTTTGTTGGTGAGGAGGTGATGTTCAGAGTCATGTTTCATACTGCGTTTGTACGGTCAAATATACTGACGCTGAGCCGCGATGAAATTGATATTCAGTGGGATGCAAAGGATCACTTCCCCAAGGACTTCAAATTTGAGGTGCTTTTTTTGGACGCTGATGCTGTTATGCCTAATCTAAACACAGTCGATGCGAGTGAAGATGCTAGTGACACAGAATGTGCTTCACCTGAGGCTGAGGAGTTCTATGAAGCAGAAGAGATCTTCAGCAATGTAATTGATGTACTGGAAGGTAAGGGAGATTATGATTTTCCAATGGTTCATGACAGTGGAGTGGATGATGGAAGTCATACAGAGATCTGGAAAGAGTATTCAGATCCTCATACTTTTCTGGATTCCATGTTAGATGATGGGATTCACCAACAGGTTGATGATACGAGGTACAAGCTTGACAAGAGGGTGGTTTTAGATACTCATGCTGTCAAAGATATTGGAGTGGATTATGGAGTAACTTTCATGACAAAGGAAGTCACTGTGAATGCTCTTGATAAGTTGGCAGTTAAGCAAAACAAATATGGCGAAGAGAACAACAAAACGGAAGAAGAGTTAGATTCAGAAGCAGGGCTGCAGGTGCTTGATATTTCCAGACCAAAATCTGATAAATTACTTATTTCTTCTCAAAAGAAACATCTTCCTTCAAACTCAAAGCCCATGCAAGAACCACATGGTTTTCAGGCACATTATGCAAAACCCAATGTAACAACTAGGTCGGTTCCTTCTAGTAAGGGTGCTTCTCAAGATTCCATGCATGTCTCATATCCACTATCAAGGAACAATAGTTCACCACTTAGATTGTCATATGTTACCTCTGAAAAGGAGGAAATTATTGCCAAAGGAAAATCTACTTCTAGTTCTCATGTCTCTGAAGCAATTGCTTTTACGGACACGATAAATGACCCGAAAAGCTGTCATGGTGATAACTCAAAATCTTCAAACATTGTACCTGAAATAGGCTCAAACTCTCCACTATTATCATTACTGTCAGTCAAAGAGACATCTCTTCAGTTAGCTAATCAAGCACCACAACAGAGCTATGGTCAAATGTTACAACTTCATCCACCTCCACCTCCTCCTCCACCTCCAGGTTTTGGGCAAAATACCCATTGGAAATCTGTTGGACAAAACAATGGAGCTTTACCTACTTCTCCTCATTCTCCTCCCATTGCAAATGGTGTAATTCCACCAAAAGTTTCACTACCACCACCACCACCTCCTCCCCCTCCTCCTCCTCCCCCTCCTTTGCAGTCTACAAATGAACCCTCCCTCCCTTCTCCCTCAATATCTCCAACAACGTTTAAAGCTCCACCTCCTGCACCCCGACCACCACATTATCCTCCACCTCCTTTAAGCAAATCTACACCACTTCCTCCTCCTCCTTTAAGTACTGCTCCACCACCGCCACCTCCTCCTCCTTCTTTATCCAGAGGTTCACCTCCCCCACCACCTCTTCCTCCATCAAGTGGAGCACCACCTCCACCATCATCTTCTTCACTGTCCAGAGCTCCACCTCCTCCACCTCCACCAAATCGTGGACCACCACCACCAACAATGCCTGGAGGCACAGCTCCTCCACCACCTCCAGGTGGTCGAGGACAACCTCCTACTGGAACACGAGCTCCTCTTGCTCATTCTCCTCATGTACCTCTTGGTGGTGCTACTTTTCCTTCAGCAATTGGAACTGATACAAGAGGGAAAGGTCGTGGACTTGGACGTCCTACAGGGTCTGGTGCCATGGGAACTCGGAAATCCTCCTTAAAGCCTCTGCATTGGAGTAAGGTAACAAGAGCATTGCAAGGAAGTTTATGGGATGAACTACAAAGACGTGGAGAGCTTCAAATAACACAAGAGTTTGACGTTTCAGAGATAGAGAAGCTTTTTTCTGCAAATGTTCCGAAACCTGCTGATTCAGATGGTAAATCTGGTGGGCGGCGCAAATCTGTTGGATCCAAAGCTGACAAAATCCACTTGATTGACCTAAGGAGGGCCAATAATACTGAAATTATGCTCACAAAGGTTAAGATGCCTCTTCCTGATATGATGGCTGCAGTACTGGCTATGGATGATTCAGTGTTAGATGTTGATCAGGTGGAAAATCTCATTAAATTTTGTCCAACCAAAGAGGAGATAGAGCTTTTAAAGGGATACACCGGTGATAAGGAGAATTTGGGGAAGTGTGAAAAGTATTTTTTAGAGCTGATGAAAGTGCCAAGAGTGGAGTCAAAACTTAGAGTATTCTCTTTCAAAATTCAGTTTGGGACTCAGATTACAGAGTTTAAGAAGAGTTTACAAACAGTCAACTCTGCTTGTGAAGAGGTCCGAAATTCATTCAAACTAAAGGAGATCATGAAGAAAATTCTTTATTTGGGTAATACATTGAATCAAGGAACAGCAAGGGGATCTGCTGTTGGATTCAAGTTAGATAGTCTCTTAAAACTAACCGACACTCGTGCTTCAAATAGTAAAATGACACTAATGCATTTTCTTTGCAAGGTCCTAGCTGAAAGGTTTCCTGGACTCCTTGATTTTCACCTTGACCTTGTTAGCTTGGAAGCAGCCACTAAGATACAATTGAAGTCATTAGCAGAAGAAATGCAAGCAATCATCAGGGGATTAGAAAAGGTTAAACAGGAGCTTGCTGCATCTGAAAAGGATGGCCCAGTGACTGAAGTTTTTCGTAAGACATCGAAGGAATTCATTGCTGTTGCAGGGTCCGAGGTGGCATCTGTAACAAACCTGTATTCTGTGGTGGGAAGAAATGCAGATGCACTTGCCCTATATTTTGTTACTACAACTCTCTTGAATTTCACAAGGTTGTTTCTGAAGGCACATGAAGAGAATTGCAAACAAACAGTGTTAGAGAAAAAGAAAGCTGATAAAGAGGCTGAAATGGAGAAGGCTAAAGGCATTAACTTCATAAGGAAGAGTGGAAAAGATGAAGAAGAAGAAAGTTGA 3870 0.4351 MALFRRFFYRKPPDHLLEISDRLYVFDCCFSKNVLEEEEYKVYIGGVLGQLQDHYPDASFMVFNFREGDRRSRISDIMSQYEMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEHKTLEMVYKQAPRELLHLLSPLNPQPSHLRYLQYISRRHLGSQWPPSETPLYLDCIILRVLPLLDGGKGCRPVVRVYGPDPSKPSNRSSKLLSSTSMGQNHVRHYMQAECMLVKIDIRCHVQGDVVLECIHLSDDFVGEEVMFRVMFHTAFVRSNILTLSRDEIDIQWDAKDHFPKDFKFEVLFLDADAVMPNLNTVDASEDASDTECASPEAEEFYEAEEIFSNVIDVLEGKGDYDFPMVHDSGVDDGSHTEIWKEYSDPHTFLDSMLDDGIHQQVDDTRYKLDKRVVLDTHAVKDIGVDYGVTFMTKEVTVNALDKLAVKQNKYGEENNKTEEELDSEAGLQVLDISRPKSDKLLISSQKKHLPSNSKPMQEPHGFQAHYAKPNVTTRSVPSSKGASQDSMHVSYPLSRNNSSPLRLSYVTSEKEEIIAKGKSTSSSHVSEAIAFTDTINDPKSCHGDNSKSSNIVPEIGSNSPLLSLLSVKETSLQLANQAPQQSYGQMLQLHPPPPPPPPPGFGQNTHWKSVGQNNGALPTSPHSPPIANGVIPPKVSLPPPPPPPPPPPPPPLQSTNEPSLPSPSISPTTFKAPPPAPRPPHYPPPPLSKSTPLPPPPLSTAPPPPPPPPSLSRGSPPPPPLPPSSGAPPPPSSSSLSRAPPPPPPPNRGPPPPTMPGGTAPPPPPGGRGQPPTGTRAPLAHSPHVPLGGATFPSAIGTDTRGKGRGLGRPTGSGAMGTRKSSLKPLHWSKVTRALQGSLWDELQRRGELQITQEFDVSEIEKLFSANVPKPADSDGKSGGRRKSVGSKADKIHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDDSVLDVDQVENLIKFCPTKEEIELLKGYTGDKENLGKCEKYFLELMKVPRVESKLRVFSFKIQFGTQITEFKKSLQTVNSACEEVRNSFKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHFLCKVLAERFPGLLDFHLDLVSLEAATKIQLKSLAEEMQAIIRGLEKVKQELAASEKDGPVTEVFRKTSKEFIAVAGSEVASVTNLYSVVGRNADALALYFVTTTLLNFTRLFLKAHEENCKQTVLEKKKADKEAEMEKAKGINFIRKSGKDEEEES 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01087 1289 Gene3D Formin, FH2 domain 883 1256 IPR042201 -
Viun9g01087 1289 MobiDBLite consensus disorder prediction 656 670 - -
Viun9g01087 1289 MobiDBLite consensus disorder prediction 673 689 - -
Viun9g01087 1289 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Viun9g01087 1289 PANTHER FORMIN-J 1 732 - -
Viun9g01087 1289 Coils Coil 1246 1266 - -
Viun9g01087 1289 Pfam Formin Homology 2 Domain 886 1235 IPR015425 -
Viun9g01087 1289 Gene3D Protein tyrosine phosphatase superfamily 13 206 IPR029021 -
Viun9g01087 1289 MobiDBLite consensus disorder prediction 693 725 - -
Viun9g01087 1289 Coils Coil 1163 1190 - -
Viun9g01087 1289 SMART PTEN_C2_2 198 338 IPR014020 -
Viun9g01087 1289 MobiDBLite consensus disorder prediction 935 954 - -
Viun9g01087 1289 PRINTS Proline rich extensin signature 753 778 - -
Viun9g01087 1289 PRINTS Proline rich extensin signature 689 710 - -
Viun9g01087 1289 PRINTS Proline rich extensin signature 711 727 - -
Viun9g01087 1289 PRINTS Proline rich extensin signature 730 747 - -
Viun9g01087 1289 PRINTS Proline rich extensin signature 659 675 - -
Viun9g01087 1289 Gene3D - 207 336 - -
Viun9g01087 1289 SMART it6_source 660 1289 IPR015425 -
Viun9g01087 1289 ProSiteProfiles Formin homology-2 (FH2) domain profile. 881 1271 IPR015425 -
Viun9g01087 1289 MobiDBLite consensus disorder prediction 645 889 - -
Viun9g01087 1289 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Viun9g01087 1289 SUPERFAMILY Formin homology 2 domain (FH2 domain) 958 1273 - -
Viun9g01087 1289 MobiDBLite consensus disorder prediction 539 566 - -
Viun9g01087 1289 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Viun9g01087 1289 CDD PTP_PTEN-like 16 190 - -
Viun9g01087 1289 Coils Coil 468 488 - -
Viun9g01087 1289 MobiDBLite consensus disorder prediction 735 839 - -
Viun9g01087 1289 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 188 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01087 Viun-Chr9 8869136 8882623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01087 1 572 FH2 protein (formin) Gene Family AT5G07740 58.638 0.0 692