Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01069 ATGGGAAGAACTCCTTGCTGCAGCCACGAGGAACTTAGAAAAGGTGCATGGACTGTTCAAGAAGACCAGAAACTCATTGCTTACATTCACAAACATGGCACTGGAAGCTGGCGCACCTTGCCCCAGAAAGCTGGTCTTCAGAGATGTGGAAAGAGTTGCAGGCTGAGATGGTTTAACTACCTCAGACCAGACATTAAGAGAGGAAAATTGAGCCCAGAAGAAGAGCAGAAGATTATAAAACTTCAAGCTGTTCTTGGCAACAGATGGTCAAGTATTGCAAAGCATTTACCAATGCGAACTGATAACGAAATCAAGAACTATTGGAACTCGTATCTGAAAAGGCACTATGAAAAGAATGATGTGGATCCATCGGGTTCAAAACCAATTAGCACTGCTAGCTCCACAGAATCAAAATCCAGTGACTTGTGCAAGGTTCCACCAAAGGAAACCGATTGCCATGGACCAAATGCCACTACACACCAATCGAATCAGTCCAACATACCAAAGACAATGTCATCTTCAACTCAGCTTCTGAACCGAGTTGCTAGTAAAATTCTTTCATCTGGGTACCTAGAAGCGATTAAATCATATAAACATGTGGTTGGTGGGAACACAAACAGTGACAGTGTGGTTAAAACCGGAATTGGAGTGGAAAAGGAGGGTAACAGAGAGCCTCTTGTGGCTAATAATTCAGTAACTTCTTCTGCTCAGTTACTGAACAAGATGGCTACTTCACTCCCTCATAAAGTTCACGGTCTTGAATCTGCAAAAGCTGTTTTTTCAAAATTACTGGAGAGCAGTGAAAAAGGTGACAGTGGAAGTGATGGTAGCTTTATTAGCAGTGATGAAATTGGAGAGTGTTTGAATGCTCTAAGCCCTTTTGAGGATGGACCGCACATAACGAACGTGGTTGGGTCCCCTTCTAGTCCTTCTCTCATATTCAATCAAGTGACCACACCTTCGTGCTTTTCGGACAATGAAGATAATTGGCAAAGTGTTTCATCTAACTACGTTTCTTTCAGACATTGTGCTCCTCCAACTGCTGCTCAATGCACTGTTTCTGAACTCAACTTGGGTGAGTCTTCTGGTTCAACATCATGTTTTCTGTTTGAGAATGCTGATCTTGGAACCTGTGATGATGAAATAAGCAAGTACATTCAGTATTTGTAA 1170 0.4231 MGRTPCCSHEELRKGAWTVQEDQKLIAYIHKHGTGSWRTLPQKAGLQRCGKSCRLRWFNYLRPDIKRGKLSPEEEQKIIKLQAVLGNRWSSIAKHLPMRTDNEIKNYWNSYLKRHYEKNDVDPSGSKPISTASSTESKSSDLCKVPPKETDCHGPNATTHQSNQSNIPKTMSSSTQLLNRVASKILSSGYLEAIKSYKHVVGGNTNSDSVVKTGIGVEKEGNREPLVANNSVTSSAQLLNKMATSLPHKVHGLESAKAVFSKLLESSEKGDSGSDGSFISSDEIGECLNALSPFEDGPHITNVVGSPSSPSLIFNQVTTPSCFSDNEDNWQSVSSNYVSFRHCAPPTAAQCTVSELNLGESSGSTSCFLFENADLGTCDDEISKYIQYL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01069 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun9g01069 389 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun9g01069 389 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Viun9g01069 389 CDD SANT 16 61 IPR001005 -
Viun9g01069 389 Gene3D - 69 141 - -
Viun9g01069 389 SMART sant 66 114 IPR001005 -
Viun9g01069 389 SMART sant 13 63 IPR001005 -
Viun9g01069 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun9g01069 389 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 218 - -
Viun9g01069 389 Gene3D - 14 66 - -
Viun9g01069 389 FunFam MYB transcription factor 69 140 - -
Viun9g01069 389 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun9g01069 389 FunFam MYB-related transcription factor 13 66 - -
Viun9g01069 389 CDD SANT 71 112 IPR001005 -
Viun9g01069 389 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Viun9g01069 389 MobiDBLite consensus disorder prediction 124 141 - -
Viun9g01069 389 MobiDBLite consensus disorder prediction 154 172 - -
Viun9g01069 389 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun9g01069 389 MobiDBLite consensus disorder prediction 119 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01069 Viun-Chr9 8648820 8650922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01069 1 191 MYB Transcription Factor Family AT5G07690 49.754 2.59e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun9g01069 Myb_DNA-binding 5.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01069 K09422 - pvu:PHAVU_010G079300g 595.89