Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01058 ATGCGGGAGGAGCACGTGGTTTTATCTGTTGTTGATCCTCTTCTTGCAGCACCTTCAACTTTGCAACCTGAGCTCGGTGGTGATGACCGAGATTCACTCGTTGAGGGTGCTACTCATGTTAATGATGTTGGGGAATGTGATACTCTGGAAGAGCAGGAACAAGAACACGAAAAAGACCTTACCCTAATGGTGGAGTGTCGCATTTGTCAGGAAGATGACACTCTTCAAAATTTGGATATACCCTGTGGATGCAATGGAACCTTGAAGTTTGCTCATAGGAGATGTGTTCAGCTATGGTGCTACGAGAAGGGTGATACAATTTGTGAAATCTGCCATCAGCCATTCAAACCTGGCTATTCTGCGACAAAAACTGTCTACCATCCTGGAGATACTTCAATTGATATCAGTGATGACTGGGAAAGCTCTAGTATTCCTTTAGATTTGCACAATTCTCGACTTTTGGCAATCGCAGCTGTAGAGCACCAAGTTCCAGAGATTCGTGAAGGTTATGCCTATGCTGCTGGCACTAGTGGAATTACATTATGGCACTCTGTTGGTCTAATTTTAATGGCTCTTTTACTTCTGAGGCATGTTGCTCCCCTCTTCAATGCTGATGTGGAGAAAGTTTTAGCGTATTTTTATTTTTTCTTTCTTCGTGCGGCTGCTGTTGTCCTTCCTTGGTATCTTATGGCCTGGATAATTCGCGTAATACAGCATCAAAGGCAAAGACAACAAGCACCTGAAGAACTTGCATTTATGCTACAAGCAGACGAACAAGGTTAG 783 0.4355 MREEHVVLSVVDPLLAAPSTLQPELGGDDRDSLVEGATHVNDVGECDTLEEQEQEHEKDLTLMVECRICQEDDTLQNLDIPCGCNGTLKFAHRRCVQLWCYEKGDTICEICHQPFKPGYSATKTVYHPGDTSIDISDDWESSSIPLDLHNSRLLAIAAVEHQVPEIREGYAYAAGTSGITLWHSVGLILMALLLLRHVAPLFNADVEKVLAYFYFFFLRAAAVVLPWYLMAWIIRVIQHQRQRQQAPEELAFMLQADEQG 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01058 260 SUPERFAMILY RING/U-box 64 116 - -
Viun9g01058 260 Pfam RING-variant domain 66 111 IPR011016 GO:0008270
Viun9g01058 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 117 IPR013083 -
Viun9g01058 260 ProSiteProfiles Zinc finger RING-CH-type profile. 58 118 IPR011016 GO:0008270
Viun9g01058 260 SMART ringv_2 65 112 IPR011016 GO:0008270
Viun9g01058 260 Pfam Protein of unknown function (DUF3675) 117 234 IPR022143 -
Viun9g01058 260 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 4 244 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01058 Viun-Chr9 8393020 8401933 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01058 65 113 C3H Transcription Factor Family AT2G37950 38.462 7.46e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01058 - - vra:106756822 396.741