Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01041 ATGGACGGAGGTGACGATTTCCACCACCACCATCACCACCACCAACACCAACACCGACAAAACTTCCCATTTCAACTCCTCGAGAAGAAAGAAGACCAAGACCCCTCTTCCTGCTCCACTTCCTCCCCTTACCCTTCCCTAGCCATCTCAGCCGAACCCTCCACCTCCAACTCCACCCGATCCACCACCCTCCTCCCCACACCCTCCGAAGCCTCCCCCAAAAAGCCACCACCCAAAAGAACCTCCACCAAAGACCGCCACACCAAAGTCGACGGCCGCGGCCGTCGAATTCGAATGCCCGCTCTCTGCGCCGCCAGAGTCTTCCAGCTCACGCGGGAGCTCGGACACAAGTCCGACGGCGAGACCATAGAGTGGCTCCTCCAGCAGGCCGAGCCTGCTGTCATCGCCGCCACCGGCACCGGCACCATCCCTGCTAACTTCACCTCCCTTAACATATCTCACCGGAGCTCCGGCTCCTCCATGTCCGTCCCCTCCCAGCTGCGATCCAACTACTTCAATTCCAACTTCTCTCTCCAACCCAGGAGAAGCCTGTTCCTTGACAACACCAATACCTCCACCACACTCCTCAATTTTCAATCCAACAACCCCATCTCCACTTCCATATTCCAACCCAAGCACGAATTGCGCGACTCCTCATCCCTCGACTTGTCCTCGGAGAACAACGAAGAGGGCTTGGGAAGGAAAAGACGGCCCTTGGAGCAAGACCTATCCTCCACCATGCAACACCATGTCGGAAGCTATTTGATGCAATCCAGCTCCTCCGGGACAATTCCGGCGAGCCATGCTCAAATCCCGGCGAATATATGGATGGTGGCGAATTCCAATAGCCAAGGCGTGAGTGGTGAAGCTCCTCTTTGGACATTCCCCGGTGTGAGTAACAGTGCCTTGTATAGAGGAAACATGTCGAGTGGGTTGCATTTCATGAACTTTCCCACCCCAATGGCCCTTTTACCGGGTCAACAATTAGGGTCTTCGGGGATTGGTGGGAACATCAACGAAGGGCATTTGAGCATGCTTTCGGGGCTTAACCCTTACCGGACGGTGATCGGCGTTTCGGAATCTCAGGCGAGTGAGTCACAGTCACATCACGGTGGAAGCGAGGATCGGCACGATGATAATTAA 1143 0.5556 MDGGDDFHHHHHHHQHQHRQNFPFQLLEKKEDQDPSSCSTSSPYPSLAISAEPSTSNSTRSTTLLPTPSEASPKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISHRSSGSSMSVPSQLRSNYFNSNFSLQPRRSLFLDNTNTSTTLLNFQSNNPISTSIFQPKHELRDSSSLDLSSENNEEGLGRKRRPLEQDLSSTMQHHVGSYLMQSSSSGTIPASHAQIPANIWMVANSNSQGVSGEAPLWTFPGVSNSALYRGNMSSGLHFMNFPTPMALLPGQQLGSSGIGGNINEGHLSMLSGLNPYRTVIGVSESQASESQSHHGGSEDRHDDN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01041 380 MobiDBLite consensus disorder prediction 215 239 - -
Viun9g01041 380 ProSiteProfiles TCP domain profile. 83 137 IPR017887 -
Viun9g01041 380 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 370 IPR005333 GO:0003700
Viun9g01041 380 MobiDBLite consensus disorder prediction 77 96 - -
Viun9g01041 380 MobiDBLite consensus disorder prediction 36 69 - -
Viun9g01041 380 Pfam TCP family transcription factor 81 238 IPR017887 -
Viun9g01041 380 MobiDBLite consensus disorder prediction 1 96 - -
Viun9g01041 380 MobiDBLite consensus disorder prediction 360 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01041 Viun-Chr9 8167705 8170069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01041 59 379 TCP Transcription Factor Family AT3G47620 44.656 2.91e-64 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun9g01041 TCP 2.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01041 - - gmx:100809154 528.48