Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01011 ATGGAAGAAGATCAAGAAGTGAAGCACTTGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGGAGATCCTTAGGGGGTCACATGAGGTCACATGTCACCAATGTTTCATCCGAGACAGAGAAGCTTTCGTCTTTCAATGGTGGAGATAGAGATAGAGATAGAGATAGAGACACGGGAACAATGGGTTCTGAAGGGGGAACTAGCAATGGAGGCTACGGTCTGAGAGAGAACCCGAAGAAGACTTGGAGGTTCACGAATTCCGTCGATGACACTTTGTTGGTGTTGGACAAGCTCTGCAAGGAGTGTGGCAAAGGCTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCACTCCGAGAGAGTATCCCAGAACAACAGCAGCTTAATGGAGGATCAAGATTCGTGGACGGAAAACACCAATGCTAGCCAAAAAATGGTGTCGGATGATAGCCATTCCGACAATGAAGCCACTGCTCCAAACCGTAGGAGAAGATCCAAGAGGAGAAGGACAAGGTACGTGGCTCCATCAACTTCTTCTGTGTCCTTTGTTTCTGAGGCAGAGCAGGAGCAGGAGCAGGAAGAGGTAGCCATGAGTTTGGTGATGCTTAGCAGGGATATTAGTCCTTGGTGTGGTTTCAATTCTGTGAACTCATTGCACTTTGAATCTCCTTCTTTGGTTCCAACCAATTTAGATTCTAAGGCTGAAGGCAAAAGGGTTGTCTCCAATGGTGAAAATAAGGTTTCCAAACCAAAGGATATTAAGTGGGAGTTTGGGAATTCGGATGCTTCAAATCTCAACTACAAAGGGAAAATAAGCTCAGAACTTTTGGGTACTGAGAGTGCTAATTCTACATTTGAGGACAATGGAATAGATGATAATAGAAATAACAAGTACACTTCAATCAAGGCAAAGTATATGGATTCTGAATTGAAGACAGGCTCTTCAAAGAGTTGGGTGAAGAACAAGTCCCCAGAAGGTGAATTGAGCAAAAGCTCCAACAAGAGAGGAAAATTTGAGTGTGCTACTTGCAAGAAAATCTTCCACTCATACCAAGCTCTTGGAGGTCACAGAGCTAGTCACAAGAAGATCAAGGGATGCTTTGCTTCAAGAAATGAGAGCAGTGAAAACAGCACTGAGTTGGAACCAGACCTTTCACCTGACCCAACAACAGAAAGTAAGCTTCTGAAGAATGAATATGTGGAAGAACATGAAATGGTTACTGTTACTACTACTACTATTACTGGTCATGAGTGCCCAATTTGCCTCAAGGTTTTTTCATCTGGACAAGCCTTGGGTGGCCACAAGAGATCTCATCACTTGCCTAATGGGTCTGATATTGCTACTAGAAACTGTCAAAGTCAAAGAGTTGTACTTGAGGGAGAAGACCCAGAAATTAGGGATTTTTTTGATCTTAATCTTCCTGCTTCTAATGAGGAAGAAGGTAACAGCCATGGCCATGCTGAGGCTTACAAACCTTGGTGGGTAGTAGGAGGCAGCAGCAGCCACAAGCAAGAGGCACTGATAGGCCTCATTTCTAACTAA 1548 0.4419 MEEDQEVKHLCKFCSKSFPCGRSLGGHMRSHVTNVSSETEKLSSFNGGDRDRDRDRDTGTMGSEGGTSNGGYGLRENPKKTWRFTNSVDDTLLVLDKLCKECGKGFHSWKALFGHMKCHSERVSQNNSSLMEDQDSWTENTNASQKMVSDDSHSDNEATAPNRRRRSKRRRTRYVAPSTSSVSFVSEAEQEQEQEEVAMSLVMLSRDISPWCGFNSVNSLHFESPSLVPTNLDSKAEGKRVVSNGENKVSKPKDIKWEFGNSDASNLNYKGKISSELLGTESANSTFEDNGIDDNRNNKYTSIKAKYMDSELKTGSSKSWVKNKSPEGELSKSSNKRGKFECATCKKIFHSYQALGGHRASHKKIKGCFASRNESSENSTELEPDLSPDPTTESKLLKNEYVEEHEMVTVTTTTITGHECPICLKVFSSGQALGGHKRSHHLPNGSDIATRNCQSQRVVLEGEDPEIRDFFDLNLPASNEEEGNSHGHAEAYKPWWVVGGSSSHKQEALIGLISN 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01011 515 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Viun9g01011 515 MobiDBLite consensus disorder prediction 315 334 - -
Viun9g01011 515 MobiDBLite consensus disorder prediction 127 149 - -
Viun9g01011 515 ProSitePatterns Zinc finger C2H2 type domain signature. 342 362 IPR013087 -
Viun9g01011 515 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 496 - -
Viun9g01011 515 Gene3D Classic Zinc Finger 1 123 - -
Viun9g01011 515 MobiDBLite consensus disorder prediction 29 43 - -
Viun9g01011 515 SUPERFAMILY beta-beta-alpha zinc fingers 6 33 IPR036236 -
Viun9g01011 515 Gene3D Classic Zinc Finger 308 447 - -
Viun9g01011 515 MobiDBLite consensus disorder prediction 372 393 - -
Viun9g01011 515 SMART c2h2final6 97 119 IPR013087 -
Viun9g01011 515 SMART c2h2final6 418 440 IPR013087 -
Viun9g01011 515 SMART c2h2final6 9 31 IPR013087 -
Viun9g01011 515 SMART c2h2final6 340 362 IPR013087 -
Viun9g01011 515 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Viun9g01011 515 ProSiteProfiles Zinc finger C2H2 type domain profile. 418 440 IPR013087 -
Viun9g01011 515 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Viun9g01011 515 ProSiteProfiles Zinc finger C2H2 type domain profile. 340 367 IPR013087 -
Viun9g01011 515 MobiDBLite consensus disorder prediction 44 60 - -
Viun9g01011 515 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Viun9g01011 515 SUPERFAMILY beta-beta-alpha zinc fingers 99 440 IPR036236 -
Viun9g01011 515 MobiDBLite consensus disorder prediction 29 78 - -
Viun9g01011 515 Pfam C2H2-type zinc finger 418 441 - -
Viun9g01011 515 Pfam C2H2-type zinc finger 9 31 - -
Viun9g01011 515 Pfam C2H2-type zinc finger 99 120 - -
Viun9g01011 515 Pfam C2H2-type zinc finger 340 364 - -
Viun9g01011 515 MobiDBLite consensus disorder prediction 127 175 - -
Viun9g01011 515 MobiDBLite consensus disorder prediction 372 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01011 Viun-Chr9 7866096 7868318 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01011 1 481 C2H2 Transcription Factor Family AT1G26610 34.165 8.49e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun9g01011 zf-C2H2_6 5.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01011 - - vra:106757260 872.848