Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01008 ATGGAACTCACCGAAGAACAACAACGACAAGTTGAAGCGAACCGCGCAGCGGCGATCGCAAAACGCAAAGCGTTCTTAGAATCCAGAGCGCAACAACAAGAACAATCTCATCGTGAAGGAGAAAACATTCCCAACCCCAATCCATGGCACCTTTTCAAGTGCCAAAAGTTCCCTAAACCCCAACCCCCAAAGTTCCTCGCCAGACTCGAAATATGCTCCCCCGATTCCTTCTCCGTCACACCCATGCCGCTTCCTCCATTTCCCTTCCCCGGTCACCACCATTGTCTCTCCACTCTCAACTCCATTCTCTCACAGGTGATGCTTTCGCACTTCACACAGACCAGCGGAGGGGTGAAGGTCTGTGTGTTCAAGCTGACGGAGTACCACGCTGTGGTCAGACAGTTGAAGGCGGAGGCGGAGGCGCTGCAGGTGGAGGAGATCCCCTGGGCGACGTTCAACGTGGTGGAGCGTCTCTCGCATTCGGTAGCTGCTGGGCGGTGGACGCCGGTGCGGCCGGAGCACTTTCCCGACGAGGAGGTTGAGCGTCTGATCGCGAAACTCCCAAGGACTCTCCTGGACGTGTTGCTCCCTTTCCAGCATGACGGACTGCGGTTCGCGTTGAGAAGAGGCGCGCGGTGTCTCATTGCCGATGATATGGGCCTCGGGAAAACGCTCCAGGCTATTGCTATTGCGGGGTGTTTTCTGGATGAAGGGTCTATACTCGTGGTTTGTCCTGCTGTGTTGCGGTTCACGTGGGCGGAGGAATTGGAGCGCTGGCTTCCTTTCTGTTTGCCGGCTGATATACATCTCGTTTTTGGCCATCAAGACAACCCTATATATTTAACAAGAAAACCTAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGAAAGAACATGCTTGAACTTCAATGGGCTCTTCTGATTGTTGATGAATCACATCATGTGCGATGTACGAAGAAAACAGAACCAGGAGAGATACAGGCTGTTCTTGATGTGGCTTCAAAAGTCAATCGTATAGTTCTGCTATCAGGGACGCCTTCTCTGTCAAGACCGTACGACATATATAACCAGATAAATATTCTATGGCCTGGTTTGCTGGGGAAGACTAAATACGAATTTGCAAAAACTTATTGCGATTTCAAATATATCAAAGGCAATCAAGGAAAATATTTTGCGGATTATTCAAAGGGTGTGCGCTTGGAAGAGTTAAATGTGTTACTAAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACATGTGATGCTACAGTTACCTCCGAAACGTCGGCAAATTATAAGACTGTTGATAAAGAGATCGGATATAGTTGCTGCTAAAACTGCAATCGGGGCATTAAGTATTGATGCCACTGAAAGGGAAAGTGAAGACATAGCTTTTGAAAATTTGGATGAAACTGATGGCAAGCTTTCTTATCAGGAACTTGGAATTGCAAAGCTTTCTGGTTTTCGTGAATGGCTTGCCCTCCATCCAATTGTTGCAGGATCAGAGAATGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTACAGGAGTTTGTATGTGAGAAAGGTATAAATTTTGTGCGAATTGATGGAAATACTCTTGCCAGAGATAGGCAATCCGCAGTAGTCTCATTTCGGTCGTCACCAGAGGTTAAAATTGCAATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAACAGCACAACATGTAGTGTTCTTGGAGCTACCACAAAGCCCAACTCTAATGCTCCAGGCTGAGGATAGAGCTCATCGTCGAGGACAAACAAATGCAGTTAATGTTTACATATTCTGTGCTAAGGATACCTTGGATGAATCACATTGGAAAAATTTAAACAAAAGTTTGCAACGAGTTTCATGTACAACTGATGGCAAATATGATGCGAAGAAAGAGATAGAGGTTGAAGGTATTTCTTATTTAGATTCATCTTTTAAAAGAGATAACTGTGAAGAGCAATCCACATGCAAAGATGCAGTAGGGGAAACACAATTGGATTTGCAACCTTCTGCGGTAAATTCAAATGAACCAGAAGCAAATAAAGATGATAAATCTGGGGAGGGAACTTCTTTTCTTAACAAGTCAATTCAAAGTTTTAATGTTTTGGCTGATGATGTCTCCTGCCAAGATTTAGGCACAGCTTCAGTTCTGGATGGAAATTGTGATGCTGATGTTTTTGAAGACGTGGAGAGATATCCTGGAAAGAGTTTAGAAGACACACATCCATTGCAGGATATGAAAACTGTTTCAACAACAGAAGCAGATGATAACCAGTCTGCTCAGGTGGTTGAAGCCGATAGTCATTGTTCTAGTCAAGTTGATTTTCTGCGATTTGAGGTGAGCCCATACACCGGAAGGATCCACTTGTATACTTGCATTTTGGGTACTGATAAAAGACCACAGCCACTTTATGAAAATTTTCGACCAGAAGAACTTGAGTTATTGTGTCCTGTTGCTCCTGAGGAGAAACAGGTTCATAATGAAAAACAAAAAATAGAGTTTGTATCTGTTAAGGACAACCCTTCCTATAGGCATGTTCTTCTAGCTTTTGTGGAAGAATGGAAGAACTTAAGGTCAATTGAACGCCGGAAATTAATTGGAAAACCGTTGCAACTTCCTTTGGCTGTTGAATTATGCTATTTGAGTGAAAGCATCAACTACAACAACAATGGATTATTAAATGGTGGAAGTAAAAGGCGCAAGACACCCATAATAGAGGTTAGCTATCCTTTACCACCAGATGCAGTTTGGAAGAAGGTTTATCTACGGAGTGGGCTCGGTAAGAAGGAAAGAGAATATACTCAAGGGTGGAGTGAGACAGATGAGCCACTCTGTAAGCTTTGTCAAAAGCAGTGCAAGGGTAAGAATGCCAAGGGACCTGAATTTCTAGAAGATCTTTTTTGTAACCTTGTGTGCTATGAGGAGTATCGAATGAGAACTAGCAGCCGATTCCTCCGTGAGGAACTTTTCAAAATTGAGCATGGTGTGTGCACAAACTGCCAATTGGACTGCCATAAGCTTGTTAAGGATACAAGACCTTTGTCATTGGAAAGGCGGCGAGAATTTATACAAAAAATAGCACCAAATGTTGCTAAGCGGAAGAACATGTTTGAGAAGCTTGTTAATGAACCAACTGAAGGAAATGCATGGCATGCTGATCATATTGTTCCAGTATATCAAGGAGGAGGGGAATGCAAGCTAGAGAATATGCGGACTCTTTGTGTGGCCTGCCATTATGATGTGACTGCTGCACAATGTGCTGAACGATCTAAAGCAAGAGCGAATGCCAAGAAAAAACTCAAAGAGTTAATGGGCAGTATAAAAAATGGTGTTAAGTTTTCTGTTATCACTAATATTAAGGAGCATAGGGCTATTGATGAACGAGGGAGTAGTATAATCGAGGATGAGCTTTTAGTGGAGGTTCCTGGAAGTGCCTATTCCTTAGCAGACAGCTAA 3504 0.4346 MELTEEQQRQVEANRAAAIAKRKAFLESRAQQQEQSHREGENIPNPNPWHLFKCQKFPKPQPPKFLARLEICSPDSFSVTPMPLPPFPFPGHHHCLSTLNSILSQVMLSHFTQTSGGVKVCVFKLTEYHAVVRQLKAEAEALQVEEIPWATFNVVERLSHSVAAGRWTPVRPEHFPDEEVERLIAKLPRTLLDVLLPFQHDGLRFALRRGARCLIADDMGLGKTLQAIAIAGCFLDEGSILVVCPAVLRFTWAEELERWLPFCLPADIHLVFGHQDNPIYLTRKPRVVVISYTMLHRLRKNMLELQWALLIVDESHHVRCTKKTEPGEIQAVLDVASKVNRIVLLSGTPSLSRPYDIYNQINILWPGLLGKTKYEFAKTYCDFKYIKGNQGKYFADYSKGVRLEELNVLLKQTVMIRRLKEHVMLQLPPKRRQIIRLLIKRSDIVAAKTAIGALSIDATERESEDIAFENLDETDGKLSYQELGIAKLSGFREWLALHPIVAGSENASKMIIFAHHHKVLDGVQEFVCEKGINFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQHVVFLELPQSPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLQRVSCTTDGKYDAKKEIEVEGISYLDSSFKRDNCEEQSTCKDAVGETQLDLQPSAVNSNEPEANKDDKSGEGTSFLNKSIQSFNVLADDVSCQDLGTASVLDGNCDADVFEDVERYPGKSLEDTHPLQDMKTVSTTEADDNQSAQVVEADSHCSSQVDFLRFEVSPYTGRIHLYTCILGTDKRPQPLYENFRPEELELLCPVAPEEKQVHNEKQKIEFVSVKDNPSYRHVLLAFVEEWKNLRSIERRKLIGKPLQLPLAVELCYLSESINYNNNGLLNGGSKRRKTPIIEVSYPLPPDAVWKKVYLRSGLGKKEREYTQGWSETDEPLCKLCQKQCKGKNAKGPEFLEDLFCNLVCYEEYRMRTSSRFLREELFKIEHGVCTNCQLDCHKLVKDTRPLSLERRREFIQKIAPNVAKRKNMFEKLVNEPTEGNAWHADHIVPVYQGGGECKLENMRTLCVACHYDVTAAQCAERSKARANAKKKLKELMGSIKNGVKFSVITNIKEHRAIDERGSSIIEDELLVEVPGSAYSLADS 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01008 1167 Coils Coil 125 145 - -
Viun9g01008 1167 Pfam HNH endonuclease 1064 1095 IPR002711 GO:0003676|GO:0004519|GO:0008270
Viun9g01008 1167 Gene3D - 173 413 IPR038718 -
Viun9g01008 1167 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 367 IPR014001 -
Viun9g01008 1167 Gene3D - 989 1122 - -
Viun9g01008 1167 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 496 650 IPR001650 -
Viun9g01008 1167 SMART ultradead3 191 386 IPR014001 -
Viun9g01008 1167 MobiDBLite consensus disorder prediction 26 47 - -
Viun9g01008 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 656 IPR027417 -
Viun9g01008 1167 Pfam Helicase conserved C-terminal domain 503 604 IPR001650 -
Viun9g01008 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 418 IPR027417 -
Viun9g01008 1167 FunFam SNF2 DNA repair protein, putative 169 417 - -
Viun9g01008 1167 SMART helicmild6 521 604 IPR001650 -
Viun9g01008 1167 MobiDBLite consensus disorder prediction 684 703 - -
Viun9g01008 1167 Gene3D - 414 691 IPR027417 -
Viun9g01008 1167 CDD HNHc 1058 1098 IPR003615 -
Viun9g01008 1167 CDD SF2_C_SNF 486 615 - -
Viun9g01008 1167 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1115 - -
Viun9g01008 1167 Pfam SNF2-related domain 212 444 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01008 Viun-Chr9 7815996 7843826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01008 501 657 RAD5 or RAD16-like Gene Family AT1G11100 34.161 5.79e-17 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun9g01008 SNF2_N 7.4e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01008 K25861 - gmx:100788690 1907.49