Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00992 ATGGCAATGGCTGCAGTTCTGCGTCGCGAAGGGAGGCGTTTGACCCAACCAATCAACGCTCTCCATTCCTCTCTCATCTCTCAAGACCAAGCTCCTCATGGCTCGCGCTCCATTTCCACCCAAGTAGTGAGGAACCGAATGAAGAGTGTGAAGAATATCCAGAAAATCACCAAGGCCATGAAGATGGTTGCCGCATCCAAGCTTCGAGCCGTTCAAACAAGAGCTGAAAATTCCCGTGGCCTCTGGCAACCATTCACTGCTCTTCTCGGTGACAATCCCAGTACTGATGTTAAGAAGAATGTTGTTGTTACCGTTTCTTCGGACAAAGGTCTTTGTGGTGGAATCAATTCCACATCTGTCAAGATAAGCAGGGTTTTGCACAAATTGAATTCCGGGCCTGATAAAGAGACAAAATATGTAATATTGGGAGAGAAGGCTAAGGCTCAATTGGTGCGTGACTCAAAGAAAGACATTGAGCTCTCTCTTACTGAATTGCAGAAGAATCCTTTGAATTATACTCAGGTTTCTGTCTTGGCAGATGACATTCTAAAGAATGTGGAGTATGATGCATTAAGGATTGTTTTCAACAAATTTCATTCTGTTGTTCAATTTTTGCCAACAGTGTCAACTGTACTATCTCCTGAGGTTATTGAGAGAGAGGCTGAATCAGGAGGAAAGCTTGGGGAACTGGATTCATACGAGATTGAAGGTGGCGAGACAAAATCTGAAATTCTTCAGAATCTGGCTGAGTTCCAGTTTTCTTGTGTCATGTACAATGCGGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCAAGAATGTCAGCCATGGACAGCTCTAGTAGGAACGCTGGGGACATGCTTGATCGTCTCACCCTCACTTATAACAGAACTCGTCAAGCATCTATCACCACAGAATTGATAGAGATTATCTCTGGAGCTTCAGCACTGGAAGGTTAA 957 0.4451 MAMAAVLRREGRRLTQPINALHSSLISQDQAPHGSRSISTQVVRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDNPSTDVKKNVVVTVSSDKGLCGGINSTSVKISRVLHKLNSGPDKETKYVILGEKAKAQLVRDSKKDIELSLTELQKNPLNYTQVSVLADDILKNVEYDALRIVFNKFHSVVQFLPTVSTVLSPEVIEREAESGGKLGELDSYEIEGGETKSEILQNLAEFQFSCVMYNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALEG 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00992 318 Gene3D ATP synthase, gamma subunit, helix hairpin domain 43 313 - -
Viun9g00992 318 PRINTS ATP synthase gamma subunit signature 263 282 IPR000131 GO:0015986|GO:0045261|GO:0046933
Viun9g00992 318 PRINTS ATP synthase gamma subunit signature 97 116 IPR000131 GO:0015986|GO:0045261|GO:0046933
Viun9g00992 318 PRINTS ATP synthase gamma subunit signature 189 206 IPR000131 GO:0015986|GO:0045261|GO:0046933
Viun9g00992 318 PRINTS ATP synthase gamma subunit signature 294 315 IPR000131 GO:0015986|GO:0045261|GO:0046933
Viun9g00992 318 FunFam ATP synthase gamma chain 271 313 - -
Viun9g00992 318 NCBIfam ATP synthase F1 subunit gamma 39 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
Viun9g00992 318 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 40 316 IPR035968 GO:0015986|GO:0045261|GO:0046933
Viun9g00992 318 Pfam ATP synthase 41 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
Viun9g00992 318 ProSitePatterns ATP synthase gamma subunit signature. 302 315 IPR023632 -
Viun9g00992 318 FunFam ATP synthase subunit gamma 63 275 - -
Viun9g00992 318 PANTHER ATP SYNTHASE GAMMA CHAIN 27 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
Viun9g00992 318 Hamap ATP synthase gamma chain [atpG]. 37 316 IPR000131 GO:0015986|GO:0045261|GO:0046933
Viun9g00992 318 CDD F1-ATPase_gamma 39 313 IPR000131 GO:0015986|GO:0045261|GO:0046933
Viun9g00992 318 PIRSF ATP_synthase_gamma 6 316 - -
Viun9g00992 318 Gene3D - 63 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00992 Viun-Chr9 7695975 7702116 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00992 17 316 Primary Pumps ATPases AT1G15700 30.595 4.93e-29 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00992 K02136 - gmx:100813657 582.408