Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00983 ATGCAGCCACCCAAGGAAAATATCAAGCTTGAACAATGCGATATATGCGGTGCTCGTGGTTTGATAGAAAAAGTTGTTACTTGCTCTAAATGCAGCGTGATTCGACATGCTTATTGCGTTCAAATTAATACCACAATAATTCCTAAAGACTGGCTCTGTGAGACTTGCCAATCCAAGCACGATTCAACTTCACCTTATAAAGTGAACCAGGATGTCAGTTCCTGGGCTTGTAAAAGGAAACCATCTGTCAAAAGAGCCAAAGTGAAGTACCTTGACTTAGATGAAGTCATTAGGCTTTCTTCTGGGAGGACCTCTGCTGGATCAAAAAATGTTATTTCCAAGATTCCCTCCCTGACTCCAAAACCAAATCCTCCCATATTACCTCCTAAAGTACTTGGGAAGCTTCCAAGAAATGATGAAGTACACAAGAGGCCAATGACTAACCAACATGCTTCTTGCTCATTGTTTAAAGTAGGATCAACACAGGAGTGTATAGAAGAAAATCAGCAACCCTTTGGTGGAGTGGTAGCAGATAAAAATGTACAGGCCCATGATCCTCAGAAAGAAAAGGCTACAAAAGATGCCCCATTTGGAGATTTATCAGCAACAAAATCTTTGGCTATTGTTGCTGGTGAACCTAGCGATGATGCTCAGAGCATTCAACAAAACTTAGACCTTTATCGTAAATTTTTACCCTCCTCAATTCATGCTTGGAGGGGTCAGATCCAAATTCTTCAAGCAGCTGCATCTAGCATAATTTATGATGGATTTGAGGCCCAAACACCATGCATGGTTAACAAGAAAGCATATAAACTTTCAAGAGAAATGCCATCAGTTCTGCAACTGGAGTCACTTCCTGCATTGAATGTCTTGACTGATATATTCCCAGATGATTCTCCTAACCTTCAGGATATTGCATTGTACTTCTTTCCATCAGAACATACTGATAGGTCATTTCTTCCTATTTTCTTGATCTTTTTCATTTTCCTTTTTCTTTTTGGTGTCATCCATGTGGGCAATTGCGGTTTAAGCTGCTTATCCTACATGTTCTCCATTGAATGTAGGTTGAGAAAGGACCTGAATGACATATTGAAGTTTATGAATGACGAGAAAGCAATGCTAAGAAGTTTTATTGATGGAGTGGAATTGCTAGTATTTACCTCAAATCAACTTGACATAGACTCAAGGGGTGTTATTGCTGAAGTAAAGGCTGGACATTTTTTATGGGGAGTATTTCGCCAATTTAACATGGAGCCAGTTGATATGGAAATTGATATGATTGGAGGAAAAGATGTGGAGGGAAAAGTTGATCGTATTCTGAAAGTTAAACCCAAGAGGGTTCTATGA 1347 0.3942 MQPPKENIKLEQCDICGARGLIEKVVTCSKCSVIRHAYCVQINTTIIPKDWLCETCQSKHDSTSPYKVNQDVSSWACKRKPSVKRAKVKYLDLDEVIRLSSGRTSAGSKNVISKIPSLTPKPNPPILPPKVLGKLPRNDEVHKRPMTNQHASCSLFKVGSTQECIEENQQPFGGVVADKNVQAHDPQKEKATKDAPFGDLSATKSLAIVAGEPSDDAQSIQQNLDLYRKFLPSSIHAWRGQIQILQAAASSIIYDGFEAQTPCMVNKKAYKLSREMPSVLQLESLPALNVLTDIFPDDSPNLQDIALYFFPSEHTDRSFLPIFLIFFIFLFLFGVIHVGNCGLSCLSYMFSIECRLRKDLNDILKFMNDEKAMLRSFIDGVELLVFTSNQLDIDSRGVIAEVKAGHFLWGVFRQFNMEPVDMEIDMIGGKDVEGKVDRILKVKPKRVL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00983 448 PANTHER - 13 414 - -
Viun9g00983 448 SUPERFAMILY FYVE/PHD zinc finger 10 61 IPR011011 -
Viun9g00983 448 SMART PHD_3 12 57 IPR001965 -
Viun9g00983 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 84 IPR013083 -
Viun9g00983 448 Pfam PHD-finger 13 58 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00983 Viun-Chr9 7648256 7655234 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun9g00983 PHD 7.9e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00983 - - var:108330054 738.413