Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00938 ATGGAAGAGGAAGAAGCGATGCAGCAACGAGTCACAGACTCGTCCCTGACCACCCATTCACTCACTTCCATAGCTTCCGACGAAGAGCAACTCGACTCGGAAACCCTATCTCTTCATTCTTCTGCGCTCCCGCACGAAGACGCTGTTGCTCATATTCAAAGAAGCTATACCGCTAGTAAGCTTGGCCAAGATGAGAGTAAGGAGTCAGCTCAACATTGTGATGAGAAAACTATTGTAAAGGAGACAGTAGAGGCACCTCAAAAACAGACCGAAAATCAAGTTCAGATGTCTGTTTGTTCAACTTCATCGTCTAAACTATCACCAGCTCCTCCTAAAGCTAATAATGTAAAAGTGCAAAATGTGGACAAAGGAACTCCTTCTGGTCGTACAACCTTATCTTCAGTTTCTGTTTCTACTGCATCTGATGGATACAACTGGCGGAAGTATGGTCAGAAACAAGTGAAGAGTCCTACTGGTTCTCGAAGTTATTACAGGTGTACCCATTCAAATTGTTGTGCTAAGAAGATTAAATTTTGTGACCATTCAGGATATGTGATAGAGATTGTTTACAAAAGTCAACATAGTCATGACCCCCCACACAAAATTGATTCTACAAAGGAAAGTAAATTCTTGCCTTACAGTGAACCTAAAATAAAATGCAGTGTTCCAAAGCAGTCTAGCAGAGTTCAAATTGATTCTGATCCATCTTCTCCAAAAAAACCTTTATATGAATCACCTTGCAGTGCTAATAAGAATCAAGAAAACTCATCCAATGATGAGAATGGCAAAGTTTTCTTGAAGGAAGAGCATGTTAGTGACCCTGAGCCAAAAAGAAGATTGAACAAACGTGATTTAACATGCTTGGATTCAGCAATAAAACCTGGAAAGAAACCAAAGTTTGTTGTACATGCAGCAGAGGATATGGGGATATCAAGTGATGGATACAGATGGCGCAAATATGGACAAAAATTGGTGAAGGGAAATCCACATTTCAGAAACTACTACAGATGCAGTTCTGCTGGATGTCCTGTGAGAAAGCACATTGAGAGTGCTATGGATAACACAAAAGCTGTGATTATAACATACAAGGGAGTGCATGATCATGACATGCCTGTGCCCAAGAAACGACAGGGTCCACCAAGTGCTTCCGTTGTGGCTGCTGCAGCTCCTGCTTCAATGAAAAATTTGCAGTTCAAAAAAAGTGGGTTGGAACAAAACCAGGAAACTTCTTCTGCTCAATGCTCAGAGGACACAGAAGATGAAGCATTGGACCTTGGTGGTGAGAAAGCAATCGAGTCAGCTCGAACTCTTCTAAGTATCGGCTTTGAAATTAAACCTTGTTGA 1344 0.4137 MEEEEAMQQRVTDSSLTTHSLTSIASDEEQLDSETLSLHSSALPHEDAVAHIQRSYTASKLGQDESKESAQHCDEKTIVKETVEAPQKQTENQVQMSVCSTSSSKLSPAPPKANNVKVQNVDKGTPSGRTTLSSVSVSTASDGYNWRKYGQKQVKSPTGSRSYYRCTHSNCCAKKIKFCDHSGYVIEIVYKSQHSHDPPHKIDSTKESKFLPYSEPKIKCSVPKQSSRVQIDSDPSSPKKPLYESPCSANKNQENSSNDENGKVFLKEEHVSDPEPKRRLNKRDLTCLDSAIKPGKKPKFVVHAAEDMGISSDGYRWRKYGQKLVKGNPHFRNYYRCSSAGCPVRKHIESAMDNTKAVIITYKGVHDHDMPVPKKRQGPPSASVVAAAAPASMKNLQFKKSGLEQNQETSSAQCSEDTEDEALDLGGEKAIESARTLLSIGFEIKPC 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00938 447 SUPERFAMILY WRKY DNA-binding domain 136 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun9g00938 447 MobiDBLite consensus disorder prediction 246 260 - -
Viun9g00938 447 FunFam WRKY transcription factor 297 372 - -
Viun9g00938 447 MobiDBLite consensus disorder prediction 222 278 - -
Viun9g00938 447 ProSiteProfiles WRKY domain profile. 306 371 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun9g00938 447 MobiDBLite consensus disorder prediction 1 73 - -
Viun9g00938 447 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 71 404 IPR044810 GO:0003700
Viun9g00938 447 SMART WRKY_cls 140 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun9g00938 447 SMART WRKY_cls 311 370 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun9g00938 447 MobiDBLite consensus disorder prediction 261 278 - -
Viun9g00938 447 ProSiteProfiles WRKY domain profile. 135 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun9g00938 447 MobiDBLite consensus disorder prediction 101 136 - -
Viun9g00938 447 MobiDBLite consensus disorder prediction 10 40 - -
Viun9g00938 447 Pfam WRKY DNA -binding domain 313 368 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun9g00938 447 Pfam WRKY DNA -binding domain 142 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun9g00938 447 SUPERFAMILY WRKY DNA-binding domain 306 371 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun9g00938 447 Gene3D WRKY domain 296 372 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun9g00938 447 Gene3D WRKY domain 128 200 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00938 Viun-Chr9 7179597 7185247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00938 129 447 WRKY Transcription Factor Family AT4G30935 57.099 8.72e-117 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun9g00938 WRKY 2.1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00938 - - gmx:100127388 621.698