Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00927 ATGGCTTTGGGAGTGTTCGGTTCAGTTCTAGTTCTGACACTCTTCTTCAAGCACTTATCATCCCAGCAACCAAACACTGATGATTTCTTTGTGTCTGAGTTCTTGAAGAAGATGGACTTAGCATCCTCCCAGGTTTACAACTTTTCTGCTTCTGTCTGTTCATTTCAAGGAGTTTCATGTGATGCCAAGAAAGAACATGTTATTGGGTTAGTCTTTTCTGGCATGAAACTTTCTGGTCCTATTCCACACACCACCATAGGTAAGCTCACAAAGCTTCGATCTTTGGACCTTAGTCACAACAAAATCACTGACTTGCCTCCTGATTTCTGGAGTTTTAGCATGCTCAAGAACCTTAACCTCTCCGGCAATCAGATTTCTGGTTCATTGACTAACAACATAGGAAACTTTGGTTTGCTGGAAGTGTTGGACTTGTCCAACAACAATTTCTCTGGGCAAATTCCTGAAGCTATTAGTTCCCTCATGAGTCTGAAAGTCATCAAACTTGACCACAACTGGTTTGAGCAAAGAATCCCTTCTGGGATTCTTAAGTGTCGTTCTCTTGTTTCAATTGATCTTTCTTCAAATCAGCTAAGTGGGACAGTTCCTGATGATTTTGGTGCTGCTTTTCCTAATCTCACTACCTTGAACCTTGCTGGGAATAGTATTAATGGCAGTGATTCTGATATTTCTGGGTTGAAATCCATTGTGAGTCTCAACATATCTGGAAATTCCTTTCAGGGTTCTGTGATGAAGTTATTTCAGGGAAGGGTTGAGGTCATGGATCTTAGAAGAAACCATTTTGAAGGTCCCATTTCTCAGGTACATTCCATCTCTAATTACAATTGGTCTCATTTAGTTTATCTGGATTTGTCAGAGAATCAGATGCATGGAGAGATTTCCAAAAATTTGATTGAATCCAAGAACCTAAAACACCTTAACCTTGCCAACAATAGATTTAGCAGACAGAAATTCCCCAAGGTTGAAATCATATCAGGATTGGAATATCTGAACTTGTCCAAAACTAGTCTCATTGGTTACATTCCTGCTGAAATCTCTCAACTTCGTAATTTGAGTACACTTGATATTTCTATGAATCATCTAACAGGGAAAATCCCTTCACTAAACAACACAAACCTCCAAGTTCTTGACCTTTCAAACAACAATCTGAGTGGAGATATCCCATCATCAATCATAGAGAAACTCCCTTTAATGAAAAAGTACAACTTCTCTTATAACAACTTAACCTTCTGTGCTTTGGAAATCAAATCAGCCATCATCCAAAGAGCATTCTATGGATCATTGAACAGTTGCCCCATTGCTGCAAACCCAAGTTTTCTGAGAAAAAGAGCCACTGAAAATAAGGGAATGAAGCTAGCCCTAGCATTGACCCTCTCAATGATCTTCTTGATTGCTGGGCTTATGCTTCTAGCTTTTGGTTGCCTTAAGAAAACAAAACCATGGCCTGTGAAACAAACCTCGTACAAAGAAGAACATCATAACATGTCTGGTCCCTTTTCATTCCACACTGATTCAACCACATGGGTGGCTGATGTGAAACAAGCAACATCAGTCCCAGTAGTGATCTTTGACAAGCCACTATTAAACATCACATTTGCAGACCTTTTGGCTGCAACTTCAAATTTTGATAGAGGTACCCTTTTGGCTGAAGGGAAATTTGGCCCTGTTTATAGAGGATTTCTACCAGGTGGTATTCATGTAGCAGTAAAAGTTCTGGTGGTTGGATCCACTCTTACAGACAAAGAAGCTGCAAGAGAACTTGAGTATCTTGGAAGAATAAAGCATCCCAATCTTGTTCCTCTAACAGGATATTGTGTAGCTGGGGATCAGAGGATTGCTATATATGACTACATGGAGAATGGAAACTTGCAAAATTTGCTTTATGATTTGCCACTTGGTGTACTTCAAAGCACAGATGATTGGAGCACAGATACATGGGAAGAAGATGTGAGTAATGGGATTCAAAACGCTGCATCAGAAGGAGGCATCACAACATGGAGATTTCGGCATAAAATCGCACTTGGCACTGCTCGAGCATTGGCTTTTCTGCATCATGGATGCTCCCCACCAATCATTCACAGAGATGTTAAAGCTAGCAGTGTGTATTTGGATTACAACTTGGAGCCAAGACTCTCTGATTTTGGGCTGGCTAAGATTTTGGATGAAGAGAGTGCACTTTGTTCACCTGGGTATGTTCCACCAGAGTTTTCTCAACAAGAATTCTGCACCTCAACTCCAAAATCTGATGTGTATTGTTTCGGGGTTGTGCTGTTTGAGCTGCTATCTGGGAAGAAACCAGTTGCAGATGATTATGGTGATGTAAAAGAAGCAACTTTGGTTAGCTGGGTGAGAGGGTTAGTGAGAGAGAACAAAGGTTCGAGAGCCATTGATCCGAAAATTCGTTGCACTGGAGCAGAAGAACAAATGGAAGAGGCCCTTAAGATTGGTTATCTCTGCACTGCTGATCTTCCTTCCAAGCGACCAAGCATGCAGCAGGTTGTTGGACTTCTTAAAGACATCGAACCTTCTAATTAG 2553 0.4085 MALGVFGSVLVLTLFFKHLSSQQPNTDDFFVSEFLKKMDLASSQVYNFSASVCSFQGVSCDAKKEHVIGLVFSGMKLSGPIPHTTIGKLTKLRSLDLSHNKITDLPPDFWSFSMLKNLNLSGNQISGSLTNNIGNFGLLEVLDLSNNNFSGQIPEAISSLMSLKVIKLDHNWFEQRIPSGILKCRSLVSIDLSSNQLSGTVPDDFGAAFPNLTTLNLAGNSINGSDSDISGLKSIVSLNISGNSFQGSVMKLFQGRVEVMDLRRNHFEGPISQVHSISNYNWSHLVYLDLSENQMHGEISKNLIESKNLKHLNLANNRFSRQKFPKVEIISGLEYLNLSKTSLIGYIPAEISQLRNLSTLDISMNHLTGKIPSLNNTNLQVLDLSNNNLSGDIPSSIIEKLPLMKKYNFSYNNLTFCALEIKSAIIQRAFYGSLNSCPIAANPSFLRKRATENKGMKLALALTLSMIFLIAGLMLLAFGCLKKTKPWPVKQTSYKEEHHNMSGPFSFHTDSTTWVADVKQATSVPVVIFDKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVLQSTDDWSTDTWEEDVSNGIQNAASEGGITTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKILDEESALCSPGYVPPEFSQQEFCTSTPKSDVYCFGVVLFELLSGKKPVADDYGDVKEATLVSWVRGLVRENKGSRAIDPKIRCTGAEEQMEEALKIGYLCTADLPSKRPSMQQVVGLLKDIEPSN 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00927 850 Pfam Leucine rich repeat 81 125 IPR001611 GO:0005515
Viun9g00927 850 Pfam Leucine rich repeat 185 244 IPR001611 GO:0005515
Viun9g00927 850 Pfam Protein tyrosine and serine/threonine kinase 552 841 IPR001245 GO:0004672|GO:0006468
Viun9g00927 850 SMART LRR_typ_2 209 232 IPR003591 -
Viun9g00927 850 SMART LRR_typ_2 136 160 IPR003591 -
Viun9g00927 850 SMART LRR_typ_2 377 400 IPR003591 -
Viun9g00927 850 SMART LRR_typ_2 89 111 IPR003591 -
Viun9g00927 850 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 324 846 - -
Viun9g00927 850 Pfam Leucine Rich Repeat 378 397 IPR001611 GO:0005515
Viun9g00927 850 Pfam Leucine Rich Repeat 139 160 IPR001611 GO:0005515
Viun9g00927 850 SUPERFAMILY L domain-like 42 273 - -
Viun9g00927 850 FunFam Putative LRR receptor-like serine/threonine-protein kinase 509 623 - -
Viun9g00927 850 Gene3D Ribonuclease Inhibitor 30 179 IPR032675 -
Viun9g00927 850 PRINTS Leucine-rich repeat signature 354 367 - -
Viun9g00927 850 PRINTS Leucine-rich repeat signature 92 105 - -
Viun9g00927 850 Gene3D Phosphorylase Kinase; domain 1 508 623 - -
Viun9g00927 850 Gene3D Ribonuclease Inhibitor 180 252 IPR032675 -
Viun9g00927 850 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 106 201 - -
Viun9g00927 850 ProSiteProfiles Protein kinase domain profile. 548 850 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00927 850 SUPERFAMILY L domain-like 228 415 - -
Viun9g00927 850 Gene3D Ribonuclease Inhibitor 327 444 IPR032675 -
Viun9g00927 850 FunFam Calmodulin-binding receptor kinase CaMRLK 255 373 - -
Viun9g00927 850 ProSiteProfiles Leucine-rich repeat profile. 378 400 IPR001611 GO:0005515
Viun9g00927 850 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Viun9g00927 850 SUPERFAMILY Protein kinase-like (PK-like) 533 842 IPR011009 -
Viun9g00927 850 Gene3D Ribonuclease Inhibitor 253 326 IPR032675 -
Viun9g00927 850 Gene3D Transferase(Phosphotransferase) domain 1 655 850 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00927 Viun-Chr9 7091419 7094515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00927 70 846 Receptor kinase-like Gene Family AT5G07280 32.053 1.70e-110 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Viun9g00927 PK_Tyr_Ser-Thr 4.8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00927 - - gmx:100807051 1466.06