Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00909 ATGGTGCAAACACGAAAGTTCCGAGGTGTCAGGCAGCGCCATTGGGGTTCTTGGGTATCCGAAATTCGCCACCCTCTTCTCAAAAGGAGGGTGTGGCTGGGTACGTTTGAAACAGCAGAAGAAGCAGCACGAGCATACGATCAAGCTGCGATTCTGATGAGTGGACGAAACGCAAAAACCAATTTTCCAATGCTTCAAACCCCAGAGGGAGACCCAAAGACGCTAACACCCACGCACCAAACCCCATCAACCTCAAAGGAACTAGAAGAGATTCTTCACGCAAAGCTTCGAAAGTGTGGGAAGCTTCCCTCGCCTTCCATGACTTGCTTGAGGCTCGACCCAGAGAACTCCCACATCGGCGTGTGGCAGAAACGCGCCGGTCACTGTTCTGACTCCAACTGGGTCATGATGGTCCCCTTCGGAAAGAAGGGTGGTGATGAAGGTGGAAACAGTTCTATGATCACTCGTAGTTCTTCTGATTCGTTTTCTGAGTGTGATCAGAATAGAAGACAGGAACATGTGAGAACGGAGATGGACGAGGAAGAGAGAATCGCTATGCAGATGATAGAAGAACTCCTCAGCAGAAACTGGCCCTCTAGCCCTTCTTCATGTAACAACATGTGTTAA 627 0.4976 MVQTRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPMLQTPEGDPKTLTPTHQTPSTSKELEEILHAKLRKCGKLPSPSMTCLRLDPENSHIGVWQKRAGHCSDSNWVMMVPFGKKGGDEGGNSSMITRSSSDSFSECDQNRRQEHVRTEMDEEERIAMQMIEELLSRNWPSSPSSCNNMC 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00909 208 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 162 - -
Viun9g00909 208 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Viun9g00909 208 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Viun9g00909 208 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Viun9g00909 208 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Viun9g00909 208 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Viun9g00909 208 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Viun9g00909 208 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Viun9g00909 208 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Viun9g00909 208 CDD AP2 6 63 IPR001471 GO:0003700|GO:0006355
Viun9g00909 208 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00909 Viun-Chr9 6953765 6954836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00909 1 196 AP2-EREBP Transcription Factor Family AT1G15360 58.738 3.05e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun9g00909 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00909 - - gmx:100779921 326.25