Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00883 ATGGATGAAAGGAGACAGAAGATAATCGCTGCTATATCAGTGATTGCACTGGTTATTCTCATAATCGTTGCTCGTGTCACGTTGAAACTCTCAAAGGGTTTCTTCCTTATATTCGGTGCCGGTGTTGCAGTCATTCTTGCAGTCTTTGCTTATGTTCTCCTCAGCATAAGATTCAACCGCAGAAGGAGGTTATTGGAGTCACAGTTGAAATCTGAAGGCCGAGAACTTCGCATAGAGTACAGTTTCTTAAAGAAAGTTGCAGGGGTTCCCATTAAGTTCAGATACAAGGAGCTTGAGGAAGCCACCGATGGGTTTCAGGCACTGATCGGAAGAGGTGCTTCTGCTTCAGTTTTCAAAGGTATTCTCAACGATGGCACTTCGGTTGCCGTGAAACGAATCGATGGAGAGGAGAGAGGGGAGAAGGAGTTCAGATCAGAGGTTGCAGCCATAGCTAGCGTGCACCACGTGAACCTGGTGAGGCTGTTGGGCTACTGTAATGCTCCGACAGCACCTAGGTACCTTGTTTATGAATATGTCTCAAATGGGTCTTTGGATTGTTGGATTTTCCCCAAAAAGTTACCTCGGCGAGGTGGGTGTTTGTCGTGGAGTTTGAGGTACAAAGTTGCCATTGATGTTGCCAAGGGACTTGCTTATCTTCACCATGATTGCAGGTCAAAGATCTTGCACCTTGACGTGAAGCCAGAAAATATACTGTTGGATGAGAATTATAGAGCGGTTGTTTCAGATTTTGGTTTGGCAAAGCTTGTTGGCAAGGATGAAAGCCAAAAGGTTGTGTCTGCGATTAGAGGAACAAGAGGGTACTTGGCACCCGAGTGGCTGTTAGAGCAAGGTATTTCGGACAAGACAGACATATATAGTTATGGGATGGTTCTGTTGGAGATTGTTGGAGGAAGGAAAAATGTGTGCTTGGTGGATGATGATGATGGAAAGGCCAAGTCCAAAAGAAAATGGAAGTACTTTCCTAAGATTGTGAATGAGAAAGTGAGGGAAGGTAAGTTCATGGAGGTTGTTGATCCTAGGTTGTTGGAAGGTGGGGGTGTTGATGAGAGGCAGGTAAAGACACTGGTTTATGTTGCTTTGTGGTGTGTGCAAGAGAAGCCAAGATCGAGGCCTAGCATGGCCCAAGTTGTTGATATGCTTGAAGGGCGTGTGAGGGTAGAACTTCCACCTGATACTAGAATGGTTCTTGTTGATTTTCTGTGTGTGGATGATGACAGTGCGACAGATAGCAGAAGCATGCAAAGGTTGAACTTTGTGTCGAATCAAAGAACACAAAGCGATGTCGAGTGTTCATCTACCTACTCCCTTGCTACCAGTGTTCTGTCTGGAAGATAG 1356 0.4535 MDERRQKIIAAISVIALVILIIVARVTLKLSKGFFLIFGAGVAVILAVFAYVLLSIRFNRRRRLLESQLKSEGRELRIEYSFLKKVAGVPIKFRYKELEEATDGFQALIGRGASASVFKGILNDGTSVAVKRIDGEERGEKEFRSEVAAIASVHHVNLVRLLGYCNAPTAPRYLVYEYVSNGSLDCWIFPKKLPRRGGCLSWSLRYKVAIDVAKGLAYLHHDCRSKILHLDVKPENILLDENYRAVVSDFGLAKLVGKDESQKVVSAIRGTRGYLAPEWLLEQGISDKTDIYSYGMVLLEIVGGRKNVCLVDDDDGKAKSKRKWKYFPKIVNEKVREGKFMEVVDPRLLEGGGVDERQVKTLVYVALWCVQEKPRSRPSMAQVVDMLEGRVRVELPPDTRMVLVDFLCVDDDSATDSRSMQRLNFVSNQRTQSDVECSSTYSLATSVLSGR 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00883 451 ProSiteProfiles Protein kinase domain profile. 103 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00883 451 Gene3D Phosphorylase Kinase; domain 1 67 178 - -
Viun9g00883 451 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Viun9g00883 451 Pfam Protein kinase domain 108 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00883 451 FunFam Putative receptor-like protein kinase 70 178 - -
Viun9g00883 451 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 34 397 - -
Viun9g00883 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Viun9g00883 451 SUPERFAMILY Protein kinase-like (PK-like) 85 388 IPR011009 -
Viun9g00883 451 FunFam Putative receptor-like protein kinase 179 395 - -
Viun9g00883 451 Gene3D Transferase(Phosphotransferase) domain 1 179 395 - -
Viun9g00883 451 SMART serkin_6 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00883 Viun-Chr9 6736211 6737979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00883 1 399 Receptor kinase-like Gene Family AT5G20050 63.119 2.93e-176 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Viun9g00883 Pkinase 8.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00883 - - vra:106757544 799.275