Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00871 ATGGCATCTCAAGCAGAACATAGCATGGATTACAAGCCCTACACCTATTCCACACTTCTGAAATCCTTTGCAGACCAAACTGATCAGAGCTACAAGCTCCAAGACTTTCTTTCTCGCTTAGAGGAAGAACGTCTCAAGATCGATGCTTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTCCTCACCAACGCTGTGGAGGCTTCAAGGCAGCAACTACAGGCTTTCAGATCCAACCAAGGTACAAGGCCAATTCTGGAAGAATTCATACCCATAAAGCATTCAAACTCTCAAGAAAGCACTGAAAAAACGTCAAACATATCAGACAAGGCGAGTTGGATGACATCAGCACAATTATGGAGCCAAGCAAGCGAAGGAACAATACCAAAATCCTCAATTACATCACCAAAAGAAAGTGCTGATACAGGGTTTAGCGTGAGCCCTAAGCTAACCCTAGACAGCAAACATAGGAATGGAGGAGCCTTTTTACCATTCTCGAAAGAGAGAAACTCGTGCCAAGGAATAGGGGTTCTTCCTGAGTTAGCCCTTGCCTCTTCTGAGAGTGAAATGAAGAAATGTGAAGAGGTAGAGAAATGTTCCAAAAGGGACAATTCAGGCAAAGGAGGGAGTTTTGAAGGGATTGTTGATGCTGCAATAGCAACTGAGGCACAAACAACTAACACTACAACCACCACAACTAACACCACTGGCCGGAAAGCAAGACGGTGTTGGTCACCGGACTTGCACCGTCGATTTGTTAATGCTCTTCAAATGCTTGGTGGATCTCAAGTGGCCACCCCAAAACAGATTAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATACAGGCTTCACACTAGAAGACCCAGCCCAAGCCTACATGCAGGAGCAGCAACACCACAACTTGTAGTCCTCGGAGGAATTTGGGTGCCACCGGAATATGCCACTGCTGCCGGTGGCCCCAGCCTCTATGGCCCACATCCCACCTCACACGTGCCACCGCCACACTACTGTGCAGCCACCCCGGTGGCTCAAGAGTTCTATAACTCAGCTCCATCACTGTCGTTGCCACCACCGCACGACACTCTCCATCACCACCATTTTCACATGTACGAGACAGCACCACACACCCAAAGCTCTCCGGAATCCGATGTTCGGAGCGGTGGCGGGCGATCTGAGAGCATCGAGGATGGGAAGTCGGAGAGTGGTAGCTGGAAAGGAAGTGGAGAGAAGAAAGGGTTGGCTGCACTGAGAGATCAAGAAGGGGAAGACAGCACTGGGAGTGAGATCACTCTTAGATTCTAG 1329 0.4891 MASQAEHSMDYKPYTYSTLLKSFADQTDQSYKLQDFLSRLEEERLKIDAFKRELPLCMQLLTNAVEASRQQLQAFRSNQGTRPILEEFIPIKHSNSQESTEKTSNISDKASWMTSAQLWSQASEGTIPKSSITSPKESADTGFSVSPKLTLDSKHRNGGAFLPFSKERNSCQGIGVLPELALASSESEMKKCEEVEKCSKRDNSGKGGSFEGIVDAAIATEAQTTNTTTTTTNTTGRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSLHAGAATPQLVVLGGIWVPPEYATAAGGPSLYGPHPTSHVPPPHYCAATPVAQEFYNSAPSLSLPPPHDTLHHHHFHMYETAPHTQSSPESDVRSGGGRSESIEDGKSESGSWKGSGEKKGLAALRDQEGEDSTGSEITLRF 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00871 442 MobiDBLite consensus disorder prediction 124 144 - -
Viun9g00871 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 235 295 IPR017930 -
Viun9g00871 442 Pfam Myb-like DNA-binding domain 240 291 IPR001005 -
Viun9g00871 442 Coils Coil 33 53 - -
Viun9g00871 442 MobiDBLite consensus disorder prediction 397 436 - -
Viun9g00871 442 FunFam Myb family transcription factor 237 295 - -
Viun9g00871 442 Gene3D - 237 295 - -
Viun9g00871 442 MobiDBLite consensus disorder prediction 381 442 - -
Viun9g00871 442 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 414 IPR044787 GO:0003700|GO:0006355
Viun9g00871 442 MobiDBLite consensus disorder prediction 381 395 - -
Viun9g00871 442 SUPERFAMILY Homeodomain-like 235 296 IPR009057 -
Viun9g00871 442 NCBIfam myb-like DNA-binding domain, SHAQKYF class 238 293 IPR006447 GO:0003677
Viun9g00871 442 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00871 Viun-Chr9 6597007 6599718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00871 1 442 G2-like Transcription Factor Family AT2G03500 51.163 1.03e-123 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun9g00871 Myb_DNA-binding 9.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00871 - - gmx:100815048 675.241