Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00849 ATGGCTGAAGCAGAAGACTACGATACCAGCTCGCCCGAGCGCGAGAACCAAACCAAAGTTAACAAGAAGAAGCTTCGCAAGAGAAAAAGACCAAACAAAAGCGAGAATACACAAGAGGAGAAGAACGATGCGAAGATTGATAGCATGGTGTCACAAGGTGAAGATGCAGAAGAAGAAGAAAAAGAAGAGATAAAGGTGAACACTAACGATTCATTTGGAATCATGAGTTCCGAGTCTTTCTCCTCTCTTAGCTTGTCCGAAGCTACTTCCAAAGCCATTGGGGACATGGGCTTCGACTGTATGACTCAGATTCAAGCGCGGGCGATTCCGCCGTTGCTGATCGGAAAGGACGTGCTGGGTGCGGCGAGAACGGGTGCTGGGAAAACCCTAGCGTTTTTGGTTCCGGCGGTGGAGTTGCTGTACAACGCTCAGTTCACACCGCTCAAGGGAACGGGTGCTGTTGTGATATGCCCGACGAGGGAGCTCGCGATTCAGACGCACGCCGTGGCGAAGGAACTGCTGAAGTACCACTCACAAACGCTCGGGTTGGTGATTGGGGGTGCGGGGCGTAAGGGAGAGGCTGAGCGCATTGTGAAAGGGGTAAACCTCTTGGTGGCGACGCCGGGTAGGCTTCTCGATCATCTTCAAAACACGAAGGGGTTCGTATATAAAAACTTGAAGTGCCTCATGATTGACGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAGATGAAGCAGATTATTAACATACTTCCAAAGAAAAGGCAAACAGCTTTGTTTTCAGCCACACAGACAAAGAAGGTTGCAGATCTTGCCCGCTTATCTTTTCAGACAACTCCTATCTTTATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGATTGCAACAGGGTTATGTTGTTGTTCCCTGTGCTAAGCGTTTTGTTGTTCTCTACTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTTTTTTTCTCTTCATGCAATTCTGTCAAATTCCATGCGGATCTTCTCAAGTGCGCTGGGGTGGACTGCTTAAATATTCATGGAAAACAAAAACAACATGCCCGTACTTCTACGTTCTTCAACTTCTGCAAAGCTGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGCAAAGGGAAATGCTTTACTTTTTCTGATTCCTGAAGAATTGAAATTTCTTCACTATTTGAAGGCAGCGAAGGTTCCTGTGAAAGAGTATGAATTTGATCATAAGAAGCTGGCAAATGTACAATCTCATCTGGAGAAGTTGGTAGCTGGCATTTATCATTTGAACAATATGGCTAAAGACGCATATCGATCATATATATTAGCGTATAATGCACATTCTATGAAAGATATATTCAATGTTCACCACTTAGATTTACTGGCTGTTGCTACTTCGTTTTGTTTTTCCAACCCACCGAAGGTGAATCTCGACATAGATAGCAGTGCTTCAAAGCATAGGAAGAAAGTACGCAAAGTGGAAGGAAAGAGATGA 1629 0.4475 MAEAEDYDTSSPERENQTKVNKKKLRKRKRPNKSENTQEEKNDAKIDSMVSQGEDAEEEEKEEIKVNTNDSFGIMSSESFSSLSLSEATSKAIGDMGFDCMTQIQARAIPPLLIGKDVLGAARTGAGKTLAFLVPAVELLYNAQFTPLKGTGAVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGAGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFVYKNLKCLMIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVADLARLSFQTTPIFIDVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCAGVDCLNIHGKQKQHARTSTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGAKGNALLFLIPEELKFLHYLKAAKVPVKEYEFDHKKLANVQSHLEKLVAGIYHLNNMAKDAYRSYILAYNAHSMKDIFNVHHLDLLAVATSFCFSNPPKVNLDIDSSASKHRKKVRKVEGKR 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00849 542 PANTHER RNA HELICASE 33 459 - -
Viun9g00849 542 MobiDBLite consensus disorder prediction 1 64 - -
Viun9g00849 542 CDD SF2_C_DEAD 299 429 - -
Viun9g00849 542 FunFam RNA helicase 295 525 - -
Viun9g00849 542 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 109 284 IPR014001 -
Viun9g00849 542 SMART ultradead3 97 302 IPR014001 -
Viun9g00849 542 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 78 106 IPR014014 GO:0003724
Viun9g00849 542 MobiDBLite consensus disorder prediction 32 52 - -
Viun9g00849 542 Gene3D - 17 288 IPR027417 -
Viun9g00849 542 SMART helicmild6 338 419 IPR001650 -
Viun9g00849 542 Pfam DEAD/DEAH box helicase 102 272 IPR011545 GO:0003676|GO:0005524
Viun9g00849 542 SMART DUF4217_3 459 522 IPR025313 -
Viun9g00849 542 Pfam Domain of unknown function (DUF4217) 460 520 IPR025313 -
Viun9g00849 542 Pfam Helicase conserved C-terminal domain 314 418 IPR001650 -
Viun9g00849 542 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 314 468 IPR001650 -
Viun9g00849 542 Gene3D - 295 537 IPR027417 -
Viun9g00849 542 CDD DEADc_DDX18 89 286 IPR044773 GO:0003724|GO:0005524
Viun9g00849 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 440 IPR027417 -
Viun9g00849 542 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 230 238 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00849 Viun-Chr9 6405021 6411237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00849 78 437 Eukaryotic Initiation Factors Gene Family AT3G13920 31.781 3.13e-46 165