Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00845 ATGACGAAAATTATCAAGGAGATGTTGCCCCCGGACGTGCGTGTTGCCAGAGATGCACAGGATTTGTTGATCGAATGTTGTGTCGAGTTTATAAACCTTGTCTCATCTGAGTCCAATGAAGTCTGTAACAAAGAGGAAAGAAGGACGATTGCACCGGAGCACGTGTTGAAGGCATTAGGGGTTCTTGGATTTGGTGACTACATCGAGGAAGTTTATGCAGCATATGAACAACACAAGCTGGAGACAATGCAAGACTCTTTGAAAGGTGCCAAGTGGAGCAACAGGGCTGAGATGACAGAGGAAGAAGCATTGGCTGAGCAGCAAAGGATGTTTGCAGAGGCCCGTGCTAGAATGAATGGAGGAGCCATTACTCCCAAGCAGCCTGACGCTGACCAAAGTTTAGAGAGCTAA 411 0.472 MTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGDYIEEVYAAYEQHKLETMQDSLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGAITPKQPDADQSLES 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00845 136 Coils Coil 95 115 - -
Viun9g00845 136 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 2 59 IPR003958 -
Viun9g00845 136 MobiDBLite consensus disorder prediction 117 136 - -
Viun9g00845 136 Gene3D Histone, subunit A 1 122 IPR009072 GO:0046982
Viun9g00845 136 FunFam Negative cofactor 2 beta 1 123 - -
Viun9g00845 136 PANTHER PROTEIN DR1 HOMOLOG 1 135 IPR044255 -
Viun9g00845 136 SUPERFAMILY Histone-fold 2 122 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00845 Viun-Chr9 6377167 6380427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00845 1 132 CCAAT-DR1 Transcription Factor Family AT5G23090 81.343 1.44e-78 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Viun9g00845 CBFD_NFYB_HMF 1.8e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00845 K21751 - gmx:547635 261.922