Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00844 ATGGAGCCTATGGACATAGTTGGAAAAGCCAAGGAAGACGCTTCGCTTCCTAAAGCAACAATGACGAAAATTATCAAGGAGATGTTGCCCCCGGACGTGCGTGTTGCCAGAGATGCACAGGATTTGTTGATCGAATGTTGTGTCGAGTTTATAAACCTTGTCTCATCTGAGTCCAATGAAGTCTGTAACAAAGAGGAAAGAAGGACGATTGCACCGGAGCACGTGTTGAAGGCATTAGGGGTTCTTGGATTTGGTGACTACATCGAGGAAGTTTATGCAGCATATGAACAACACAAGCTGGAGACAATGCAAGACTCTTTGAAAGGTGCCAAGTGGAGCAACAGGGCTGAGATGACAGAGGAAGAAGCATTGGCTGAGCAGCAAAGGATGTTTGCAGAGGCCCGTGCTAGAATGAATGGAGGAGCCATTACTCCCAAGCAGCCTGACGCTGACCAAAGTTTAGAGAGCTAA 471 0.4713 MEPMDIVGKAKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGDYIEEVYAAYEQHKLETMQDSLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGAITPKQPDADQSLES 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00844 156 FunFam Negative cofactor 2 beta 6 143 - -
Viun9g00844 156 Gene3D Histone, subunit A 5 142 IPR009072 GO:0046982
Viun9g00844 156 Coils Coil 115 135 - -
Viun9g00844 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Viun9g00844 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Viun9g00844 156 MobiDBLite consensus disorder prediction 137 156 - -
Viun9g00844 156 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00844 Viun-Chr9 6376879 6380384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00844 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 82.468 8.36e-93 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Viun9g00844 CBFD_NFYB_HMF 7.7e-23 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00844 K21751 - gmx:547635 300.441