Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00835 ATGATGATGATGGCGAGTTCAAGAGAAGGTCAACAAGCGAAGCAAGAAGGTGGCGCCATTAATATTGACAAGTTTTCCAAGGCATCTTCCAGTACAAGACAATGGTCAGCGTTCAGAAATCCAAGAATTGTGAGAGTGTCACGTTCCTTTGGAGGAAAAGATAGGCACAGCAAGGTTTGCACCATAAGAGGGTTGAGGGACAGAAGGATTAGGCTCTCAGTGCCCACAGCAATTCAGCTATATGATCTTCAAGACAAGCTTGGGCTAAACCAACCAAGCAAAGTGATAGATTGGTTGCTTGAAGCAACAAAACTCGACATTGACAAGCTCCCTCCACTTCAATTCCCTCAGGGTTTTGGTCAATTTCATCATCCACAAACCCTACTCCCCTTTCATGATTCAAGTTCCTCTCAGCTTTCTCTCGGACCCTTCGGTGAATCTAGCTCCTCATTTGGTGGGGGGGTTCAAAACTCCATGCCAAAGTCAAGGTATTGGGACAGTATAGATTCAATATCAAGATTGAAAGGCAAGGAAGCTGAAAAGGGCAAGTGGGTCAAAACAAACGAGGAAGATCATCAAAACCATGAAGATGATGTTGTTGGAAGCTACAGCAACTTGCATGCATCTACTCAGAGGCTTTTCCCTATGGGTAGTGGTGGTAGCACCACTACTCACACCCTTTTACCTGGTTTGTTGAACAACACCATGCCATATAACCCCTACAATGGTGAGCCTTCTGGTTTGTCCTTATCCCAATTTGGAGGCCATGGCTTGTTGTTTCCTTCCCAGCAGGTAGATCCAAGTCCAAGCAGTGCAAATGGTGTTCAATACCCATCTTCTTTGGCATTACCTTCATCTGCTTCTCAATTTTTCCTTGGTTCATCTTCTGCTACACCACCAATGTTCACTACCTATGCTCCATTTCTTACACCCTCGGTTGACAATGATCCTAGACAGTTCAACCACATTCAGTTCTTGAACTCAGCTTCTCAAATCTTGCCTCATCCTCTCATTCCATCTCTTCACTCCTTCAATCCACATGTCAGACCCTTCCCTGCAACACCCTTCAGTTCGAAGCTTTTGGACTCTGATAGCATCCGTAGCCAACATGACAAGGGTAGCACTTCTTGA 1131 0.4509 MMMMASSREGQQAKQEGGAINIDKFSKASSSTRQWSAFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVIDWLLEATKLDIDKLPPLQFPQGFGQFHHPQTLLPFHDSSSSQLSLGPFGESSSSFGGGVQNSMPKSRYWDSIDSISRLKGKEAEKGKWVKTNEEDHQNHEDDVVGSYSNLHASTQRLFPMGSGGSTTTHTLLPGLLNNTMPYNPYNGEPSGLSLSQFGGHGLLFPSQQVDPSPSSANGVQYPSSLALPSSASQFFLGSSSATPPMFTTYAPFLTPSVDNDPRQFNHIQFLNSASQILPHPLIPSLHSFNPHVRPFPATPFSSKLLDSDSIRSQHDKGSTS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00835 376 ProSiteProfiles TCP domain profile. 52 110 IPR017887 -
Viun9g00835 376 Pfam TCP family transcription factor 52 175 IPR017887 -
Viun9g00835 376 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 13 268 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00835 Viun-Chr9 6255576 6258144 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00835 36 196 TCP Transcription Factor Family AT5G60970 56.818 2.69e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun9g00835 TCP 9.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00835 - - gmx:100788984 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04670 3 54123212 54125324 Viun9g00835 9 6255576 6258144 PCT