Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00828 ATGTATAGTCAAGTGAATCGTGGTTCTCATTTCGGGCAGAGTCCCGTCCCTCCGGTGCTGCCGCCTCCACCACCACCACAACCACCACAACCACCACCGCAGTATCAGCAGCCTCCGCCGCATTTCCATCAGTTCCCACCCCCTAACGTTGGTGGTCCTCCTCCTCCACCGCCTAACATTGGTGGTCCACCACCACCACCACCACCTCATCATGTTTATTTAAATGGACCTTCCCCTCCTCCTCCTCCACCGCGTCCTAATTCGTCATCCCCAATTCCCATGAACCTTCCGGTTCAAGGTTCACATAATGTGATGCCAAATGCTGGACAATCCTACCCTATCCCTTCTCAGTTACACCATGGGAACACCATGACACCGCAAACATCTTGGGCTCCAGGACCACCGGCTAGAGTATTGCCACCACCACCACCACCTCCACCCCATCCTCCCTCAGCTTCCCAAGGTCAAATTTTGTATAACCCTCCTTTCCATGGTCCACCTCTGCAACCCGGTGATGTTCAGAATCTGCATACTGCTCCTCCACCACCACCTCTTTCAACAGGTTATTTCCATTCAACTGTTGGGAATTACCGAGTGCCTCCTGGTGTTCCCCCACCGTTGCCATTGTCTCCACCACCTGCTCTTCCCGCTCCACCACCTCCTCCTCTTAATGCTCCGGTAACCTCCTCCTCCTCCACCTCAAATGTTGCAGATGACCCTCACTCTGTGAAGACTGTGGATTTGGTTGATGGAGTTGTAGCTTCTCTTCCATCTAATATTGCACCTGTACATGGTTCTGATTCTAAACGGGATGGTCCAAATTGTAGAGAGGTTGCTGGTGCTGAAAAAGAGGAGGATCTTCCCCCACCTAGGCCAACGGAAGAAAATACTGTACTGAAGATAGAAGCTTTGTGTCAGCTTATTGCTGAGAAGGGAGCTGATATTGAAGATAAGATTCGTCGAGACGAATTTCAAAATCCTGAATATGTATTTTTGTTTGGCGGAGAACCAGGAACTGAGGCTGCAATTTCTAACTCTTATTTCCTGTGGATGAAGAAGAAATATAATTTAGATACTGGATGGCATGAAAAGAAAAGGCAACCAGAGAGAATATACTCTTCAGATGATATCACACTTTCTGACAAGGACCAAGGTTCAAACTATGCAACTGAAGCCCTAAATCGGGATGGTGAAGTGCTTAGAGTGAATCAGAATATAGCACAGCCGCAGAAATTATCAGAGAATGACCCTGCCAGGGACATCTCATCCTGCAGTCCATCATACTTTGGATCCATGGGAGTCAGCAAACAGAATGAAGGACCAGAGATTTTATCTGATCTGGAGCACAGCAAATCTGTAAGACCAGTTACCAAGGTTCAAAGTCTTGAGAATGACTCCACTGAAGTAGCTGAGTTATCCTTGGGCAAAGCTTTGGAGGAAACTGCAACTTGTGTTGATGATGATTTTGTATGTACTGTTACTTCTGATCACAATAAAACTGCTACTACTAATAGGGATTATGGGATACTCCTAGCGAGTGGCAGCCCAATAAGACTTCTTCAAGATTATGCTTCTGATGACACTTCAGCTAAGGGGGATGAAAGCAATGCTGCAGATGCTAACGTTTTCACATTCTCAGAAGGTGTTGTTGATACTGGTGTTTCAGCCAGTACTCAAAAGGGGTTTGGGTCACTCTCCAGAACATCACAGGATGGTTCAGAAATATCTACACATTTATTACAAGAGTCTAAGAAAACTCGCAATCGAAAAAAATCTGTCTCACGTTGGAGTAGTGATGGATGTGTTGAGCATAACCTTGAAAATCAGATGTCCGTTAATTTTGCTTCATCGGTAGAAGCTTCCAAGGGCAAAGATAGATTAGAGGATACTGCCATTGACACTGGTAGTAGAAGTGGTAATGCTGAAAAGGAAGATGAGGGGAAAACCTCAAAATTTGAACCAAATGTTATGAAAGTAGATGAATTCGGAAGACAACTAAGAGAAGGTCTTTCAGATAGTGATTCTGATGATTCATTCCATCCACGGACACGGAGGCTTAATAAAAGAGATAGAAGAAGCTGGAGCCGCAGCCAGTCTCCCCCAGACAGGAGGAGTAGGAGGAATAGGAGGAGTCCTCGGAGGAGAAGAGATAAAAGAAACAGGTCTCGCAGCTGGTCACCCCGGCATCGAAGAAGCAGTAGGTCACCAATCTCAAGACGTTCAGGTGACTTTCGTGGTGAGAATGTTAAAAGGGAGAAGGATCAGTGCTTTGACTTTCTTCGAGGAAAGTGCTATCGGGGAGCATCTTGCAGGTACATTCACCATGAATCTGACATGTATGCAACTTCAAGGCGCTCTAAGAATAAACATGATCTGGAAGTCAGTTATGGTGGAAAAGAATCAAAGACTAATGGAGACATGACGAATATTTCATCTAAAGTGTTTGATAATGAGCATGATGGAGTTAGAAGTCAGGATGATGATCTTAGTCTGAATGTGACTAGCCAGGAAGTAGTGCAGAAAAAAGAAGATTCAGGGAGGAATGTTGTTGCATCAACTATCATTCATCTTGATGGCCTATCAGTTAATAGCAATCTAGGTAAATCTAAATCTATCAGAGAGGTTGCTCCTGAAATGCAGGAAACCATTGATGTGAGGGAGGATCCAAGGAATTCAATCCATGGGAATGATAGTTCGGAAGCAGGTGATTCTCAACAGCAACACATGGTTGAAGGCTTTCACCCTGATGCTTTAGGCCGTGATAATACTTCTAAATCATCTGGTACATATAAAGATGTCATTCCCTCAGGAGACGGTCGTTTTGCTCAGAAAATGCAACTTGGTGTTTCTGCTGCTGGAATTCTGGAACATTCGGGTTATCCATCTCAGCATGTAAATGCATCCTCTGTGACTGATGCATCACCTGATAAAAGATCAACTGTTTCTACTAGTATTACTGAAGTTCCTGATAGTGTCACATCAGAGCAGGCTTCATTGAACCCTCAGGCTTCAAAAGAGTTACCTCCACAGTGTGGCTCTTCAGTGGAATTTCCACGTCATAATTACCAGTTGTCTGCACCTGTTGTTTCACATTCCCCTGGCGAAAATCCTGTGCACATGCCACAAATTTCAAGGCAGTATGATGTGATGCAACAAAGGGCATTCTTTCCTTTCCAATCCACTGCCAGAGAAAAGTTTGAACCTTACCCAGCTCCTTTACACATGCAGAATACTCACCTCAATGTACCACCTAATAGCTCTTGGACATCATTGCCATTGCCACCGCCACTGCCACCACTGCCACCCCCGCCATCCAGAGTGGTGTATGATTCCAATGTAAACTCAGGAGTTGTAAAATCATATATTTCTTCTGAATTTATTCAGAGTCAAATGCATTCAAGGACTGACTTTGTTTCCCAGACTTCCATGAAGCCTTTACCAAGTTGCTCTGAGAAATCTGAATTTCAGGATATAGCATACCCTCCCATGCAGGATCATTCACGAACTTTGATGCTTACTGAACCTTTCTCTCCAAAGCAACTTCCTCAAGGGAACCCAGCTAGTCAATTACTTTCAGGATCTAGTCTCAACGGAGATGAATTTCATAATCAACTTCCATTGCAGGATTCAAAATTTTCCAGTGCGACATCATTTGGCAGCTTGCAGCCTCAACAAAATCAATTTTCCTGGAAATCGGATGTGAACAGACTACAATCTTCTCTGGGTGGCAAGTTACCCCCCGAAGGACATTTTATGACAACCTCACACATTGATTCATCATCACAGAAACAACAATCAATGTACAATTTTCAGTGTTCTGTACCCGAGGCTAATTTGGGTGTGCCTGGGGAGACTGCTACTGTTTCCAGATATCCACCTGATTTTCTGGATAGCAGTCATTCAACTTCTCTTCCACCGTTTAGTGGATCAAGAATATCTGCTCACTATAATCCTTATGCATCAACCTTTGAGAAACCACTAAGTTCCAAATTTAGTTCAAGTATTTTTAGACAGGAAAATGAAATAGTCCATGGTAACAATTTTGCTTCTTCTAGATTGAACGATACTACTGTAAATGGGGAGGTTGATGGTGGGGTTGGATCGAGACATTCAGCATCTGCACCAAAATCAGGTAGAGCTCTTGGTCAGATTTTGCCTAGGTCTGGTGGTGACCAATACGATCCACTTTTTGACAGCATTGAACCATCATCCTCTTTGAGAAAAACTGATTTTGATCAGAAGCAGGAAGTTACAGGTGAATCCGATGTCAGCCTAAGGCCCAAAAGTTCTTACATCTCTTTGGATGTGGATGAGAAAAACAAGCAGGAGGAGGTTGGGGCTGTTGCCTCTACCACTTCTCAAAATAATGATGAATACAGTGAGACGGCGGATGCAGAAGTTGGTGCTATTGAAAATGAGAGCCTAAGTGATGATGTGGATTTTGCAAAAGTTACTACAAAGGAGGTTGAGAGTAATCGGGTCAAGTCTCCTGGGAAAAGAAAAAAGAGTAAGGATTCCAGATCGATGAAATTGTTCAAAGTTTCTATTGCGAACTTTGTAAAGGAGGTTTTGAAACCATCATGGCGGCAAGGTAATATGAGTAAGGTTGCTTTTAAAACCATTGTGAAAAAGACCGTGGATAAAGTGTCAGGAGCCATGAAAGGCCACCGTGTACCCAAGTCCCAAGCAAAGATAAGTCAATATATCGATTCATCGCAGCGAAAGTTGACTAAACTTGTGATGGGTTACGTTGACAAGTATGTGAAGGTATGA 4773 0.4389 MYSQVNRGSHFGQSPVPPVLPPPPPPQPPQPPPQYQQPPPHFHQFPPPNVGGPPPPPPNIGGPPPPPPPHHVYLNGPSPPPPPPRPNSSSPIPMNLPVQGSHNVMPNAGQSYPIPSQLHHGNTMTPQTSWAPGPPARVLPPPPPPPPHPPSASQGQILYNPPFHGPPLQPGDVQNLHTAPPPPPLSTGYFHSTVGNYRVPPGVPPPLPLSPPPALPAPPPPPLNAPVTSSSSTSNVADDPHSVKTVDLVDGVVASLPSNIAPVHGSDSKRDGPNCREVAGAEKEEDLPPPRPTEENTVLKIEALCQLIAEKGADIEDKIRRDEFQNPEYVFLFGGEPGTEAAISNSYFLWMKKKYNLDTGWHEKKRQPERIYSSDDITLSDKDQGSNYATEALNRDGEVLRVNQNIAQPQKLSENDPARDISSCSPSYFGSMGVSKQNEGPEILSDLEHSKSVRPVTKVQSLENDSTEVAELSLGKALEETATCVDDDFVCTVTSDHNKTATTNRDYGILLASGSPIRLLQDYASDDTSAKGDESNAADANVFTFSEGVVDTGVSASTQKGFGSLSRTSQDGSEISTHLLQESKKTRNRKKSVSRWSSDGCVEHNLENQMSVNFASSVEASKGKDRLEDTAIDTGSRSGNAEKEDEGKTSKFEPNVMKVDEFGRQLREGLSDSDSDDSFHPRTRRLNKRDRRSWSRSQSPPDRRSRRNRRSPRRRRDKRNRSRSWSPRHRRSSRSPISRRSGDFRGENVKREKDQCFDFLRGKCYRGASCRYIHHESDMYATSRRSKNKHDLEVSYGGKESKTNGDMTNISSKVFDNEHDGVRSQDDDLSLNVTSQEVVQKKEDSGRNVVASTIIHLDGLSVNSNLGKSKSIREVAPEMQETIDVREDPRNSIHGNDSSEAGDSQQQHMVEGFHPDALGRDNTSKSSGTYKDVIPSGDGRFAQKMQLGVSAAGILEHSGYPSQHVNASSVTDASPDKRSTVSTSITEVPDSVTSEQASLNPQASKELPPQCGSSVEFPRHNYQLSAPVVSHSPGENPVHMPQISRQYDVMQQRAFFPFQSTAREKFEPYPAPLHMQNTHLNVPPNSSWTSLPLPPPLPPLPPPPSRVVYDSNVNSGVVKSYISSEFIQSQMHSRTDFVSQTSMKPLPSCSEKSEFQDIAYPPMQDHSRTLMLTEPFSPKQLPQGNPASQLLSGSSLNGDEFHNQLPLQDSKFSSATSFGSLQPQQNQFSWKSDVNRLQSSLGGKLPPEGHFMTTSHIDSSSQKQQSMYNFQCSVPEANLGVPGETATVSRYPPDFLDSSHSTSLPPFSGSRISAHYNPYASTFEKPLSSKFSSSIFRQENEIVHGNNFASSRLNDTTVNGEVDGGVGSRHSASAPKSGRALGQILPRSGGDQYDPLFDSIEPSSSLRKTDFDQKQEVTGESDVSLRPKSSYISLDVDEKNKQEEVGAVASTTSQNNDEYSETADAEVGAIENESLSDDVDFAKVTTKEVESNRVKSPGKRKKSKDSRSMKLFKVSIANFVKEVLKPSWRQGNMSKVAFKTIVKKTVDKVSGAMKGHRVPKSQAKISQYIDSSQRKLTKLVMGYVDKYVKV 1590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00828 1590 ProSiteProfiles Zinc finger C3H1-type profile. 750 777 IPR000571 GO:0046872
Viun9g00828 1590 MobiDBLite consensus disorder prediction 199 226 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 1445 1461 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 92 130 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 1405 1421 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 706 735 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 15 91 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 619 746 - -
Viun9g00828 1590 Gene3D Surp module 274 358 IPR035967 GO:0003723|GO:0006396
Viun9g00828 1590 MobiDBLite consensus disorder prediction 561 598 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 259 294 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 963 1015 - -
Viun9g00828 1590 SUPERFAMILY Surp module (SWAP domain) 287 354 IPR035967 GO:0003723|GO:0006396
Viun9g00828 1590 MobiDBLite consensus disorder prediction 1176 1204 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 963 1009 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 1347 1463 - -
Viun9g00828 1590 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 392 1589 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 133 152 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 874 894 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 578 597 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 269 291 - -
Viun9g00828 1590 Gene3D - 749 803 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 873 935 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 1 242 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 621 684 - -
Viun9g00828 1590 MobiDBLite consensus disorder prediction 561 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00828 Viun-Chr9 6175048 6184191 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun9g00828 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00828 - - vum:124822814 2555.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00828 9 6175048 6184191 Viun9g00828 9 6175048 6184191 ECH