Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00815 ATGGGGAGAGGAAGGGTGCAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTCACGTTCTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCTCATGAGATCTCTGTGCTTTGTGATGCTGAAGTCGCCCTCATAGTTTTCTCCACCAAAGGCAAACTCTTTGAGTACTCCAGCGATCCATGTATGGAAAGAATTCTTGAACGGTATGAGAGGTATTCATATGCTGAGAGGCAGCTTGTTGTAAGTGATCAGCCACAAAGTGAAAATTGGACTCTAGAACATGCAAAGCTCAAAGCAAGGTTGGAAGTTCTACAGAAAAATCAAAGGAATTTTATGGGACAAGATTTGGATGGTCTAAGTATCAAAGAGCTTCAGAATTTGGAGCATCAGCTTGATAGTGCTCTCAAACACATTAGATCACGGAAGAACCAACTCATGTATGAATCTATTTCAGAGCTTAATAAAAAGGATAAGGCCCTACAAGAGCAAAACAACACTCTCGCAAAGAAGATAAAGGAGAAAGAGAAGGCACTAGCAGCACAACAAGCGCAGTTTGAGCGACAAGCTGATGAAATGGATCTAGCCTCCTCTGTCCTCGTACCTCAACCATTGGAGACTTCCAATATTAGAGGGTCCTCACAAGTAGGAGGTGATGTAGGAGATAATGATGGAATTGTAACTCCAACTCGAGCAAATGCCATTCTTCCACCGTGGATGCTTCGTCCTACAAATGAATAG 741 0.4278 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAERQLVVSDQPQSENWTLEHAKLKARLEVLQKNQRNFMGQDLDGLSIKELQNLEHQLDSALKHIRSRKNQLMYESISELNKKDKALQEQNNTLAKKIKEKEKALAAQQAQFERQADEMDLASSVLVPQPLETSNIRGSSQVGGDVGDNDGIVTPTRANAILPPWMLRPTNE 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00815 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Viun9g00815 246 Coils Coil 125 145 - -
Viun9g00815 246 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Viun9g00815 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun9g00815 246 Coils Coil 151 192 - -
Viun9g00815 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun9g00815 246 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Viun9g00815 246 Coils Coil 88 108 - -
Viun9g00815 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Viun9g00815 246 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Viun9g00815 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun9g00815 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun9g00815 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun9g00815 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun9g00815 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun9g00815 246 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Viun9g00815 246 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00815 Viun-Chr9 6080978 6087818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00815 1 210 MADS-box Gene Family AT1G26310 61.321 3.45e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun9g00815 K-box 1.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00815 K09264 - gmx:100816836 405.216