Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00795 ATGGAAGCTAGTACAGGTCTTTTTGCTGGTTCTCCAAACAGCAAAGAGCTTGTGGCCATTCAAGGACCCGATGAGCCTAAGCCGGTGAAGAACTTAGATGGTCAGCTTTGTGAGATATGTGGTGATTCTGTGGGAGTTACAGTTGAAGGAGACTTGTTTGTAGCTTGTGAAGAGTGTGGTTTCCCTGTATGCAGGCCATGCTATGAGTATGAGAGAAGGGAAGGGACTCAAGTTTGTCCTCAGTGTCATACAAGATACAAGCGCATCAAAGGAAGTCCAAGAGTGGAGGGAGATGAGGATGAAGACGACGTGGATGATATTGAACATGAATTCAAGCATGAAGAGATGCATAAGGGAAACATGATCCATGGAGATGATGATGGGAATTCTAAATCAGGTTTAGCAAAGGTGAATGGGGAGCTGCTATCTACAAGTGTGGGAGAACCTGAAGCAGGTGCAAAGTTGGATGAGAAGGAGAACATAGATGAGTGGATGTTGCGCCAAGGGAATCTGTGGCCTGAAACTGATGATTCAGTTGATCAGGAAAAGGCCATGAAAGAGCCATTGTCAAGGAAAGTAGCAATACCATCTGGCAAACTCAGTCCTTACAGAATGATGGTTGTGGCTAGATTCCTCCTTCTATTACTCTTCTTTCAGTACAGAATTTTCCACCCAGTACCTGATGCAGTTGGACTATGGTTCATATCTGTAACGTGTGAAATCTGGCTTGCATTATCCTGGATGATTGATCAGATTCCCAAATGGTTTCCCATCGATCGGGAGACATATCTTGATCGTCTTTCAATCAGGTTTGAACAAGAGAACAAGCCAAACATGCTTTCTCCAATAGATATCATTGTAACTACTGTGGATCCAATCAAGGAACCTCCACTTGTGACAGCCAATACTGTTCTTTCAATCTTGGCCCTGGATTACCCTGCTGACAAAATCTCATGCTATGTTTCTGATGACGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACAGCTGAGTTTTCCAGAAAGTGGGTTCCTTTCTGCAAAAAGTTCTCTATAGAACCCAGAGCACCAGAAAAGTACTTCTCTGATAAAATAGATTTTCTAAAGGATAAGCTTCAATCCACTTACGTAAAAGAACGCCGTACTATGAAGAGAGAATACGAAGAATTTAAGGTGAGAATAAATGCACTGGTGGCTAAATCTATGCGAGTTCCCCCAGAAGGGTGGACTATGAAAGATGAGACACCATGGCCAGGAAACAACCCCAAAGATCATCCAAGTATGATACAGGTCCTTCTTCCTCACAATGTAGGTAGTGAACTTCCTTGTCTTGTCTATACATCTCGTGAGAAAAGGCCTGCATTTCAACACCACGGCAAAGCTGGTGCAATCAACGCCTTGCTTCGAGTATCGGCAGTGTTAAGCAATGCTCCTTTTGTGCTCAATTTGGATTGCAATCACTATGTAAATAACAGCAAAGTCGTGCGAGAGGCCATGTGTTTCTTTATGGACATACAACTTGGGAATGGCATTGGCTTTGTACAGTTTCCACTAAGATTTGACAGCCTAGATAGGCATGATCGTTATGCCAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCTAGATGGACTTCAGGGACCGGCTTATGTTGGTTCAGCATGTATCTTCAGAAGGAAATCCTTAACTGGCTGTGACTCACCAGTGTCTTCAAAACGCCCAAGCATGGTGCAAGTACACTCAAAACAGGATGAGAATGGAGAAGAAGCTAGCATAACAGCAGCAGCAACAGATGAGGAAAAGGAACTATTGAAGTCGCAGAAGAATGATGAAAATAAATTTGAGAAGTCCACACATACCATGAACTCTTCATTAACAGAAGAAGGTGGTGTTGATCCTTCTTCCAGTCAGGAAGTCCTGCTTAAAGAAGCTATTCATGTCATGGGTTCTAAATATGAAGACAGAACTCTCTGGGGATATGAGATGGGTTTAAGCTATGGATCTATAGCAGCAGATACTCTGACAAGTTTAAAGATGCATTGTCATGGTTGGAGATCTGTATATTGCATGCCAAAAAGAGATCCATTCAGGGGTACAGCTCCTATCAACCTCACAGATAGACTCAACCAGGTGCTGAGATGGGCAGTGGGATCACTTCAGATCTTATTCAGCCACCATTGCCCTCTTCTGTATGACCTCAATAGTGGAAGACTCAAAGGACTCCAAAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCCCTCCTAATATACTGTATCGTTCCTGCTATATGCTTGCTCACTGATAAATTCATCACACCATCGGTTGGCACTTTTGCAAGTCTAGTTTTCACCGCATTGTTCATCTCAATCTTTGCCTCGGCGATTCTTGAATTGAGATGGAGTGGAGTTGGCCTGGAGGAATGGTGGAGAAGCCAGCAATTCTGGGTGATTGGGAGTGTGTCTGCGAACCTCTTTGCCGTTGTGCAGAGCATTATGGGAGCTCTTCCACTGGGAAGAGTGAACACAAACTTCAGCATTGTATCAAAGGCACCAGACGATGTAGAATTTCGTGAACTGTATACCATTCGATGGACTGCACTTCTAATACCTCCAACCACCATCATAATAATCAACCTCATTGGTATTGTGGCTGGCTTCACAGATTCCATAAACAGTGGAGAACATTCTTGGGGAGCACTGCTTGGGAAACTGTTCTTTTCTTTATGGGTTATTGTCCATTTGTACCCTTTCCTTAAAGGTCTAATGGGTAGGCAGAACAGAACACCAACTCTTGTTGTCATATGGTCTGTGCTCTTGGCTTCTATCTTCTCCTTGGTTTGGGTGAGAGTTGACCCTTTTGTGTTGAAAACAAAGGGGCCTGATGTCAAGCAATGTGGAATCAGTTGCTGA 2934 0.4342 MEASTGLFAGSPNSKELVAIQGPDEPKPVKNLDGQLCEICGDSVGVTVEGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKHEEMHKGNMIHGDDDGNSKSGLAKVNGELLSTSVGEPEAGAKLDEKENIDEWMLRQGNLWPETDDSVDQEKAMKEPLSRKVAIPSGKLSPYRMMVVARFLLLLLFFQYRIFHPVPDAVGLWFISVTCEIWLALSWMIDQIPKWFPIDRETYLDRLSIRFEQENKPNMLSPIDIIVTTVDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFSRKWVPFCKKFSIEPRAPEKYFSDKIDFLKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTMKDETPWPGNNPKDHPSMIQVLLPHNVGSELPCLVYTSREKRPAFQHHGKAGAINALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRHDRYANKNTVLFDINLRCLDGLQGPAYVGSACIFRRKSLTGCDSPVSSKRPSMVQVHSKQDENGEEASITAAATDEEKELLKSQKNDENKFEKSTHTMNSSLTEEGGVDPSSSQEVLLKEAIHVMGSKYEDRTLWGYEMGLSYGSIAADTLTSLKMHCHGWRSVYCMPKRDPFRGTAPINLTDRLNQVLRWAVGSLQILFSHHCPLLYDLNSGRLKGLQRIAYINSTVYPFSSIPLLIYCIVPAICLLTDKFITPSVGTFASLVFTALFISIFASAILELRWSGVGLEEWWRSQQFWVIGSVSANLFAVVQSIMGALPLGRVNTNFSIVSKAPDDVEFRELYTIRWTALLIPPTTIIIINLIGIVAGFTDSINSGEHSWGALLGKLFFSLWVIVHLYPFLKGLMGRQNRTPTLVVIWSVLLASIFSLVWVRVDPFVLKTKGPDVKQCGISC 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00795 977 MobiDBLite consensus disorder prediction 604 620 - -
Viun9g00795 977 SUPERFAMILY Nucleotide-diphospho-sugar transferases 283 779 IPR029044 -
Viun9g00795 977 CDD mRING-HC-C4C4_CesA 35 85 - -
Viun9g00795 977 MobiDBLite consensus disorder prediction 621 636 - -
Viun9g00795 977 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 187 944 - -
Viun9g00795 977 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Viun9g00795 977 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Viun9g00795 977 MobiDBLite consensus disorder prediction 604 636 - -
Viun9g00795 977 Coils Coil 381 401 - -
Viun9g00795 977 SUPERFAMILY RING/U-box 22 107 - -
Viun9g00795 977 FunFam Cellulose synthase 19 110 - -
Viun9g00795 977 Pfam Cellulose synthase 283 971 IPR005150 GO:0016020|GO:0016760|GO:0030244
Viun9g00795 977 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 435 570 IPR029044 -
Viun9g00795 977 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 271 379 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00795 Viun-Chr9 5884313 5889503 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00795 1 977 Cell Wall Biosynthesis AT5G17420 62.694 0.0 1311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00795 K10999 - gmx:100777270 1777.3