LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g00794	ATGGAAGCTAGTACAGGTCTTTTTGCTGGTTCTCCAAACAGCAAAGAGCTTGTGGCCATTCAAGGACCCGATGAGCCTAAGCCGGTGAAGAACTTAGATGGTCAGCTTTGTGAGATATGTGGTGATTCTGTGGGAGTTACAGTTGAAGGAGACTTGTTTGTAGCTTGTGAAGAGTGTGGTTTCCCTGTATGCAGGCCATGCTATGAGTATGAGAGAAGGGAAGGGACTCAAGTTTGTCCTCAGTGTCATACAAGATACAAGCGCATCAAAGGAAGTCCAAGAGTGGAGGGAGATGAGGATGAAGACGACGTGGATGATATTGAACATGAATTCAAGCATGAAGAGATGCATAAGGGAAACATGATCCATGGAGATGATGATGGGAATTCTAAATCAGGTTTAGCAAAGGTGAATGGGGAGCTGCTATCTACAAGTGTGGGAGAACCTGAAGCAGGTGCAAAGTTGGATGAGAAGGAGAACATAGATGAGTGGATGTTGCGCCAAGGGAATCTGTGGCCTGAAACTGATGATTCAGTTGATCAGGAAAAGGCCATGAAAGAGCCATTGTCAAGGAAAGTAGCAATACCATCTGGCAAACTCAGTCCTTACAGAATGATGGTTGTGGCTAGATTCCTCCTTCTATTACTCTTCTTTCAGTACAGAATTTTCCACCCAGTACCTGATGCAGTTGGACTATGGTTCATATCTGTAACGTGTGAAATCTGGCTTGCATTATCCTGGATGATTGATCAGATTCCCAAATGGTTTCCCATCGATCGGGAGACATATCTTGATCGTCTTTCAATCAGGTTTGAACAAGAGAACAAGCCAAACATGCTTTCTCCAATAGATATCATTGTAACTACTGTGGATCCAATCAAGGAACCTCCACTTGTGACAGCCAATACTGTTCTTTCAATCTTGGCCCTGGATTACCCTGCTGACAAAATCTCATGCTATGTTTCTGATGACGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACAGCTGAGTTTTCCAGAAAGTGGGTTCCTTTCTGCAAAAAGTTCTCTATAGAACCCAGAGCACCAGAAAAGTACTTCTCTGATAAAATAGATTTTCTAAAGGATAAGCTTCAATCCACTTACGTAAAAGAACGCCGTACTATGAAGAGAGAATACGAAGAATTTAAGGTGAGAATAAATGCACTGGTGGCTAAATCTATGCGAGTTCCCCCAGAAGGGTGGACTATGAAAGATGAGACACCATGGCCAGGAAACAACCCCAAAGATCATCCAAGTATGATACAGGTCCTTCTTCCTCACAATGTAGGTAGTGAACTTCCTTGTCTTGTCTATACATCTCGTGAGAAAAGGCCTGCATTTCAACACCACGGCAAAGCTGGTGCAATCAACGCCTTGCTTCGAGTATCGGCAGTGTTAAGCAATGCTCCTTTTGTGCTCAATTTGGATTGCAATCACTATGTAAATAACAGCAAAGTCGTGCGAGAGGCCATGTGTTTCTTTATGGACATACAACTTGGGAATGGCATTGGCTTTGTACAGTTTCCACTAAGATTTGACAGCCTAGATAGGCATGATCGTTATGCCAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCTAGATGGACTTCAGGGACCGGCTTATGTTGGTTCAGCATGTATCTTCAGAAGGAAATCCTTAACTGGCTGTGACTCACCAGTGTCTTCAAAACGCCCAAGCATGGTGCAAGTACACTCAAAACAGGATGAGAATGGAGAAGAAGCTAGCATAACAGCAGCAACAGATGAGGAAAAGGAACTATTGAAGTCGCAGAAGAATGATGAAAATAAATTTGAGAAGTCCACACATACCATGAACTCTTCATTAACAGAAGAAGGTGGTGTTGATCCTTCTTCCAGTCAGGAAGTCCTGCTTAAAGAAGCTATTCATGTCATGGGTTCTAAATATGAAGACAGAACTCTCTGGGGATATGAGATGGGTTTAAGCTATGGATCTATAGCAGCAGATACTCTGACAAGTTTAAAGATGCATTGTCATGGTTGGAGATCTGTATATTGCATGCCAAAAAGAGATCCATTCAGGGGTACAGCTCCTATCAACCTCACAGATAGACTCAACCAGGTGCTGAGATGGGCAGTGGGATCACTTCAGATCTTATTCAGCCACCATTGCCCTCTTCTGTATGACCTCAATAGTGGAAGACTCAAAGGACTCCAAAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCCCTCCTAATATACTGTATCGTTCCTGCTATATGCTTGCTCACTGATAAATTCATCACACCATCGGTTGGCACTTTTGCAAGTCTAGTTTTCACCGCATTGTTCATCTCAATCTTTGCCTCGGCGATTCTTGAATTGAGATGGAGTGGAGTTGGCCTGGAGGAATGGTGGAGAAGCCAGCAATTCTGGGTGATTGGGAGTGTGTCTGCGAACCTCTTTGCCGTTGTGCAGAGCATTATGGGAGCTCTTCCACTGGGAAGAGTGAACACAAACTTCAGCATTGTATCAAAGGCACCAGACGATGTAGAATTTCGTGAACTGTATACCATTCGATGGACTGCACTTCTAATACCTCCAACCACCATCATAATAATCAACCTCATTGGTATTGTGGCTGGCTTCACAGATTCCATAAACAGTGGAGAACATTCTTGGGGAGCACTGCTTGGGAAACTGTTCTTTTCTTTATGGGTTATTGTCCATTTGTACCCTTTCCTTAAAGGTCTAATGGGTAGGCAGAACAGAACACCAACTCTTGTTGTCATATGGTCTGTGCTCTTGGCTTCTATCTTCTCCTTGGTTTGGGTGAGAGTTGACCCTTTTGTGTTGAAAACAAAGGGGCCTGATGTCAAGCAATGTGGAATCAGTTGCTGA	2931	0.434	MEASTGLFAGSPNSKELVAIQGPDEPKPVKNLDGQLCEICGDSVGVTVEGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKHEEMHKGNMIHGDDDGNSKSGLAKVNGELLSTSVGEPEAGAKLDEKENIDEWMLRQGNLWPETDDSVDQEKAMKEPLSRKVAIPSGKLSPYRMMVVARFLLLLLFFQYRIFHPVPDAVGLWFISVTCEIWLALSWMIDQIPKWFPIDRETYLDRLSIRFEQENKPNMLSPIDIIVTTVDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFSRKWVPFCKKFSIEPRAPEKYFSDKIDFLKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTMKDETPWPGNNPKDHPSMIQVLLPHNVGSELPCLVYTSREKRPAFQHHGKAGAINALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRHDRYANKNTVLFDINLRCLDGLQGPAYVGSACIFRRKSLTGCDSPVSSKRPSMVQVHSKQDENGEEASITAATDEEKELLKSQKNDENKFEKSTHTMNSSLTEEGGVDPSSSQEVLLKEAIHVMGSKYEDRTLWGYEMGLSYGSIAADTLTSLKMHCHGWRSVYCMPKRDPFRGTAPINLTDRLNQVLRWAVGSLQILFSHHCPLLYDLNSGRLKGLQRIAYINSTVYPFSSIPLLIYCIVPAICLLTDKFITPSVGTFASLVFTALFISIFASAILELRWSGVGLEEWWRSQQFWVIGSVSANLFAVVQSIMGALPLGRVNTNFSIVSKAPDDVEFRELYTIRWTALLIPPTTIIIINLIGIVAGFTDSINSGEHSWGALLGKLFFSLWVIVHLYPFLKGLMGRQNRTPTLVVIWSVLLASIFSLVWVRVDPFVLKTKGPDVKQCGISC	976

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g00794	976	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	283	778	IPR029044	-
	Viun9g00794	976	CDD	mRING-HC-C4C4_CesA	35	85	-	-
	Viun9g00794	976	MobiDBLite	consensus disorder prediction	576	635	-	-
	Viun9g00794	976	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	187	943	-	-
	Viun9g00794	976	Pfam	Cellulose synthase	591	970	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Viun9g00794	976	Pfam	Cellulose synthase	283	581	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Viun9g00794	976	Pfam	Zinc-binding RING-finger	27	104	IPR027934	-
	Viun9g00794	976	MobiDBLite	consensus disorder prediction	620	635	-	-
	Viun9g00794	976	Coils	Coil	381	401	-	-
	Viun9g00794	976	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	435	570	IPR029044	-
	Viun9g00794	976	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	271	379	IPR029044	-
	Viun9g00794	976	MobiDBLite	consensus disorder prediction	581	619	-	-
	Viun9g00794	976	SUPERFAMILY	RING/U-box	22	107	-	-
	Viun9g00794	976	FunFam	Cellulose synthase	19	110	-	-
	Viun9g00794	976	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	20	110	IPR013083	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g00794	Viun-Chr9	5884313	5889503	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g00794	1	976	Cell Wall Biosynthesis	AT5G17420	62.658	0.0	1310

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g00794	K10999		-	gmx:100777270	1777.68