LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g00792	ATGGAAGCTAGTACAGGTCTTTTTGCTGGTTCTCCAAACAGCAAAGAGCTTGTGGCCATTCAAGGACCCGATGAGCCTAAGCCGGTGAAGAACTTAGATGGTCAGCTTTGTGAGATATGTGGTGATTCTGTGGGAGTTACAGTTGAAGGAGACTTGTTTGTAGCTTGTGAAGAGTGTGGTTTCCCTGTATGCAGGCCATGCTATGAGTATGAGAGAAGGGAAGGGACTCAAGTTTGTCCTCAGTGTCATACAAGATACAAGCGCATCAAAGGAAGTCCAAGAGTGGAGGGAGATGAGGATGAAGACGACGTGGATGATATTGAACATGAATTCAAGCATGAAGAGATGCATAAGGGAAACATGATCCATGGAGATGATGATGGGAATTCTAAATCAGGTTTAGCAAAGGTGAATGGGGAGCTGCTATCTACAAGTGTGGGAGAACCTGCAGGTGCAAAGTTGGATGAGAAGGAGAACATAGATGAGTGGATGTTGCGCCAAGGGAATCTGTGGCCTGAAACTGATGATTCAGTTGATCAGGAAAAGGCCATGAAAGAGCCATTGTCAAGGAAAGTAGCAATACCATCTGGCAAACTCAGTCCTTACAGAATGATGGTTGTGGCTAGATTCCTCCTTCTATTACTCTTCTTTCAGTACAGAATTTTCCACCCAGTACCTGATGCAGTTGGACTATGGTTCATATCTGTAACGTGTGAAATCTGGCTTGCATTATCCTGGATGATTGATCAGATTCCCAAATGGTTTCCCATCGATCGGGAGACATATCTTGATCGTCTTTCAATCAGGTTTGAACAAGAGAACAAGCCAAACATGCTTTCTCCAATAGATATCATTGTAACTACTGTGGATCCAATCAAGGAACCTCCACTTGTGACAGCCAATACTGTTCTTTCAATCTTGGCCCTGGATTACCCTGCTGACAAAATCTCATGCTATGTTTCTGATGACGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACAGCTGAGTTTTCCAGAAAGTGGGTTCCTTTCTGCAAAAAGTTCTCTATAGAACCCAGAGCACCAGAAAAGTACTTCTCTGATAAAATAGATTTTCTAAAGGATAAGCTTCAATCCACTTACGTAAAAGAACGCCGTACTATGAAGAGAGAATACGAAGAATTTAAGGTGAGAATAAATGCACTGGTGGCTAAATCTATGCGAGTTCCCCCAGAAGGGTGGACTATGAAAGATGAGACACCATGGCCAGGAAACAACCCCAAAGATCATCCAAGTATGATACAGGTCCTTCTTCCTCACAATGTAGGTAGTGAACTTCCTTGTCTTGTCTATACATCTCGTGAGAAAAGGCCTGCATTTCAACACCACGGCAAAGCTGGTGCAATCAACGCCTTGCTTCGAGTATCGGCAGTGTTAAGCAATGCTCCTTTTGTGCTCAATTTGGATTGCAATCACTATGTAAATAACAGCAAAGTCGTGCGAGAGGCCATGTGTTTCTTTATGGACATACAACTTGGGAATGGCATTGGCTTTGTACAGTTTCCACTAAGATTTGACAGCCTAGATAGGCATGATCGTTATGCCAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCTAGATGGACTTCAGGGACCGGCTTATGTTGGTTCAGCATGTATCTTCAGAAGGAAATCCTTAACTGGCTGTGACTCACCAGTGTCTTCAAAACGCCCAAGCATGGTGCAAGTACACTCAAAACAGGATGAGAATGGAGAAGAAGCTAGCATAACAGCAGCAACAGATGAGGAAAAGGAACTATTGAAGTCGCAGAAGAATGATGAAAATAAATTTGAGAAGTCCACACATACCATGAACTCTTCATTAACAGAAGAAGGTGGTGTTGATCCTTCTTCCAGTCAGGAAGTCCTGCTTAAAGAAGCTATTCATGTCATGGGTTCTAAATATGAAGACAGAACTCTCTGGGGATATGAGATGGGTTTAAGCTATGGATCTATAGCAGCAGATACTCTGACAAGTTTAAAGATGCATTGTCATGGTTGGAGATCTGTATATTGCATGCCAAAAAGAGATCCATTCAGGGGTACAGCTCCTATCAACCTCACAGATAGACTCAACCAGGTGCTGAGATGGGCAGTGGGATCACTTCAGATCTTATTCAGCCACCATTGCCCTCTTCTGTATGACCTCAATAGTGGAAGACTCAAAGGACTCCAAAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCCCTCCTAATATACTGTATCGTTCCTGCTATATGCTTGCTCACTGATAAATTCATCACACCATCGGTTGGCACTTTTGCAAGTCTAGTTTTCACCGCATTGTTCATCTCAATCTTTGCCTCGGCGATTCTTGAATTGAGATGGAGTGGAGTTGGCCTGGAGGAATGGTGGAGAAGCCAGCAATTCTGGGTGATTGGGAGTGTGTCTGCGAACCTCTTTGCCGTTGTGCAGAGCATTATGGGAGCTCTTCCACTGGGAAGAGTGAACACAAACTTCAGCATTGTATCAAAGGCACCAGACGATGTAGAATTTCGTGAACTGTATACCATTCGATGGACTGCACTTCTAATACCTCCAACCACCATCATAATAATCAACCTCATTGGTATTGTGGCTGGCTTCACAGATTCCATAAACAGTGGAGAACATTCTTGGGGAGCACTGCTTGGGAAACTGTTCTTTTCTTTATGGGTTATTGTCCATTTGTACCCTTTCCTTAAAGGTCTAATGGGTAGGCAGAACAGAACACCAACTCTTGTTGTCATATGGTCTGTGCTCTTGGCTTCTATCTTCTCCTTGGTTTGGGTGAGAGTTGACCCTTTTGTGTTGAAAACAAAGGGGCCTGATGTCAAGCAATGTGGAATCAGTTGCTGA	2928	0.4341	MEASTGLFAGSPNSKELVAIQGPDEPKPVKNLDGQLCEICGDSVGVTVEGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKHEEMHKGNMIHGDDDGNSKSGLAKVNGELLSTSVGEPAGAKLDEKENIDEWMLRQGNLWPETDDSVDQEKAMKEPLSRKVAIPSGKLSPYRMMVVARFLLLLLFFQYRIFHPVPDAVGLWFISVTCEIWLALSWMIDQIPKWFPIDRETYLDRLSIRFEQENKPNMLSPIDIIVTTVDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFSRKWVPFCKKFSIEPRAPEKYFSDKIDFLKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTMKDETPWPGNNPKDHPSMIQVLLPHNVGSELPCLVYTSREKRPAFQHHGKAGAINALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRHDRYANKNTVLFDINLRCLDGLQGPAYVGSACIFRRKSLTGCDSPVSSKRPSMVQVHSKQDENGEEASITAATDEEKELLKSQKNDENKFEKSTHTMNSSLTEEGGVDPSSSQEVLLKEAIHVMGSKYEDRTLWGYEMGLSYGSIAADTLTSLKMHCHGWRSVYCMPKRDPFRGTAPINLTDRLNQVLRWAVGSLQILFSHHCPLLYDLNSGRLKGLQRIAYINSTVYPFSSIPLLIYCIVPAICLLTDKFITPSVGTFASLVFTALFISIFASAILELRWSGVGLEEWWRSQQFWVIGSVSANLFAVVQSIMGALPLGRVNTNFSIVSKAPDDVEFRELYTIRWTALLIPPTTIIIINLIGIVAGFTDSINSGEHSWGALLGKLFFSLWVIVHLYPFLKGLMGRQNRTPTLVVIWSVLLASIFSLVWVRVDPFVLKTKGPDVKQCGISC	975

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g00792	975	SUPERFAMILY	RING/U-box	22	107	-	-
	Viun9g00792	975	FunFam	Cellulose synthase	19	110	-	-
	Viun9g00792	975	CDD	mRING-HC-C4C4_CesA	35	85	-	-
	Viun9g00792	975	Pfam	Cellulose synthase	282	580	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Viun9g00792	975	Pfam	Cellulose synthase	590	969	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Viun9g00792	975	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	186	942	-	-
	Viun9g00792	975	Pfam	Zinc-binding RING-finger	27	104	IPR027934	-
	Viun9g00792	975	MobiDBLite	consensus disorder prediction	575	634	-	-
	Viun9g00792	975	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	434	569	IPR029044	-
	Viun9g00792	975	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	270	378	IPR029044	-
	Viun9g00792	975	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	282	777	IPR029044	-
	Viun9g00792	975	MobiDBLite	consensus disorder prediction	619	634	-	-
	Viun9g00792	975	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	20	110	IPR013083	-
	Viun9g00792	975	Coils	Coil	380	400	-	-
	Viun9g00792	975	MobiDBLite	consensus disorder prediction	580	618	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g00792	Viun-Chr9	5884313	5889503	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g00792	1	975	Cell Wall Biosynthesis	AT5G17420	62.464	0.0	1308

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g00792	K10999		-	gmx:100777270	1778.07