Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00773 ATGGGGAAACACCCAAGACACAAAACCAATGCAACCACTAACAACAACAACAACAACCTTAACTCCACCAACACCGTCACCACCAAGGTTAAACGAACAAGAAGAAGTGTCCCCAGAGATTCCCCTCCTCAACGCAGCTCAATATACAGAGGAGTCACTAGGCACCGATGGACAGGCCGATATGAAGCTCATTTGTGGGACAAGAATTGCTGGAATGAGTCGCAGAACAAGAAAGGACGACAAGTGTACCTCGGTGCTTATGACGATGAAGAGGCTGCAGCACACGCTTACGATTTAGCAGCATTGAAATACTGGGGTCAAGATACCATACTTAATTTTCCATTATGTACGTACCAGAATGAAGTGAAAGAAATGGAGGGTCAATCTCGAGAAGAGTATATTGGATCATTAAGAAGGAAAAGCAGCGGCTTTTCTCGTGGAGTGTCTAAATACAGAGGTGTTGCAAGACACCATCATAATGGAAGATGGGAGGCTCGGATTGGCAGGGTTTTCGGCAACAAATATCTTTACCTCGGAACTTACGCCACACAAGAAGAAGCTGCAACAGCATACGACATGGCAGCTATTGAATATCGAGGACTCAACGCTGTGACCAATTTCGACCTTAGCCGCTACATAAAGTGGCTTAAGCCAAACAACAACGACAACACTGTGAACCCTAATGTTCTTGACGCTAACCCTAATTCTGAGACCAACTTTACCCCAAATTCTAATCAACAACAAGGATTCAATTTTTTCCAGAGTCAAGAATCGACGGCGACTCAGCCTCGATCTTCTGGCGCCACGTCAGCCCTAGGACTTTTGCTGCAGTCGTCCAAGTTCAAGGAGATGATGGAGATGACTTCCGCCGCCGATTTATCGACGGCGGCGTCGGAGTCTGAGTTGGTGCCGTGCACGTTTCCCGATGACATTCAGACCTATTTCGAGTGCGAAGATTCCAACAGATATGGAGAAGGGGATGATAACATGTTCAGCGAGCTCAACGGGTTTGTGCCCCATATGTTCCATTGTGATGAGTTTTGA 1044 0.4655 MGKHPRHKTNATTNNNNNNLNSTNTVTTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQDTILNFPLCTYQNEVKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNDNTVNPNVLDANPNSETNFTPNSNQQQGFNFFQSQESTATQPRSSGATSALGLLLQSSKFKEMMEMTSAADLSTAASESELVPCTFPDDIQTYFECEDSNRYGEGDDNMFSELNGFVPHMFHCDEF 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00773 347 MobiDBLite consensus disorder prediction 1 47 - -
Viun9g00773 347 Pfam AP2 domain 48 106 IPR001471 GO:0003700|GO:0006355
Viun9g00773 347 Pfam AP2 domain 149 200 IPR001471 GO:0003700|GO:0006355
Viun9g00773 347 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 270 - -
Viun9g00773 347 SMART rav1_2 48 120 IPR001471 GO:0003700|GO:0006355
Viun9g00773 347 SMART rav1_2 150 214 IPR001471 GO:0003700|GO:0006355
Viun9g00773 347 ProSiteProfiles AP2/ERF domain profile. 48 114 IPR001471 GO:0003700|GO:0006355
Viun9g00773 347 SUPERFAMILY DNA-binding domain 149 210 IPR016177 GO:0003677
Viun9g00773 347 Gene3D AP2/ERF domain 48 116 IPR036955 GO:0003700|GO:0006355
Viun9g00773 347 Gene3D AP2/ERF domain 149 210 IPR036955 GO:0003700|GO:0006355
Viun9g00773 347 SUPERFAMILY DNA-binding domain 47 115 IPR016177 GO:0003677
Viun9g00773 347 MobiDBLite consensus disorder prediction 7 31 - -
Viun9g00773 347 MobiDBLite consensus disorder prediction 223 248 - -
Viun9g00773 347 CDD AP2 149 210 IPR001471 GO:0003700|GO:0006355
Viun9g00773 347 FunFam AP2-like ethylene-responsive transcription factor 149 210 - -
Viun9g00773 347 FunFam AP2-like ethylene-responsive transcription factor 47 116 - -
Viun9g00773 347 PRINTS Ethylene responsive element binding protein signature 190 210 IPR001471 GO:0003700|GO:0006355
Viun9g00773 347 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Viun9g00773 347 ProSiteProfiles AP2/ERF domain profile. 150 208 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00773 Viun-Chr9 5729343 5734746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00773 44 212 AP2-EREBP Transcription Factor Family AT5G57390 72.189 2.42e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Viun9g00773 AP2 6.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00773 K09285 - gmx:100795869 561.607