Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00770 ATGTTGATAACTGTTAGGGAAGCTTCATGTTCTTCTCCCCTCAATTTCTGGCTTAATCGTTTCAAACCAAAACCTTTTAAACCATTGAAAACATCCATTTGCCAAGCCAGTTTCTCTGTCCAAAGAACACCCACTCATTCATGGAAAACTCCTCATCTCTCAACAAGTGATGAAGCACATTTTGATCCCTTGGGTATCAACTCAGATTTACCTTCTGCTTTGAATTCTACCTGGGAAAATCTGTTGTGCTTGTTTACACAACCGTTTGAGAGTACTTCAAGTACAGAAAAGGGAAAACCTAACAACTCACAAGGGGTGGCAGCTGCAATAGAGGATAGTTCAATAGACTTTGGTGACTTTTTTAAAGGTCCACTTCCAGGGAAGTTTCTCAAACTTTTAGGGCTTCTTGCCTTGTCACGGCTCGGAGTTTACATACCCCTAGGTGGAGTTAATAGGGATGCTTTTGTTGGAAATTTAGATCAGAACAGTTTGCTAAGCACTTTGGACTCGTTTTCTGGTGGTGGTATTGGTAGACTTGGGGTATGCTCCCTTGGTATTGTTCCCTTCATCAATGCACAGATTGTTTTCCAGCTTCTTGCACAAATATATCCTAAATTGCAAGATCTTCAAAAGAGAGAAGGTGAGGCTGGAAGAAAGAAAATTCTGCAGTACACTCGATATGCTTCAGTCGGATTTGCCATTGTGCAGGCAATCGGCCAAGTTCTTTACCTACGTCCCTATGTCAATGACTTTTCTGTGGAGTGGGTTATTTCTTCTGTAATCTTATTGACTCTTGGCTCTGTGTTTACAACATATATTGGGGAACGAATTACAGACCTAAAACTTGGGAATGGTACTTCTCTTTTGATATTCACAAACATTATATCCTACTTGCCAGCTTCTTTTGGTAGGACAATTGCACAAGCATTTAATGATGCTAACTATGTTGGACTTGCTACCATTATCGTGTCTTTCGTGTTTTTGGTGGTTGGTATCGTTTATGTTCAGGAAGCAGAGAGAAAAATCCCTATTAACTATGCTTCTAGATACGCCAGCAAAAGTACTGGACTTGAAAAGTCTGCTTACCTACCCTTTAAGGTAAATAGCTCTGGAGTAATGCCTATCATCTTCTCTACGTCGTCATTAGCTCTTCCTGGTACTTTAGCACGCTTCACTGGTTTAACTGCTTTAAAGAAGGCTGCGGTGGCACTAAATCCAGGAGGTTCCTTCTATCTTCCGTTCAACATACTTTTGATAGCCTTCTTCAACTATTATTACACTTTCCTACAATTGGACCCTGATGATGTGAGTGAACAACTGAAACGACAAGGTGCTTCAATTCCACTTGTCAGACCAGGCAGAAGTACAGCTACATTTATCAAAACAGTTCTTAGTAGAATATCAGTTCTGGGTTCAACATTTTTGGCTATCTTGGCTGCTGGTCCAGCAGTTGTAGAACAGATCACTCACTTGACTGCATTTCGGGGATTTGCAGGAACTTCTGTTCTTATTCTTGTTGGTTGTGCAACAGACACGGCAAGAAAAGTTCAAGCTGAGATTATATCTCAAAAGTACAAGAACATAGAGTTCTATGATTTTGATAAATATTGA 1611 0.4029 MLITVREASCSSPLNFWLNRFKPKPFKPLKTSICQASFSVQRTPTHSWKTPHLSTSDEAHFDPLGINSDLPSALNSTWENLLCLFTQPFESTSSTEKGKPNNSQGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGLLALSRLGVYIPLGGVNRDAFVGNLDQNSLLSTLDSFSGGGIGRLGVCSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSVEWVISSVILLTLGSVFTTYIGERITDLKLGNGTSLLIFTNIISYLPASFGRTIAQAFNDANYVGLATIIVSFVFLVVGIVYVQEAERKIPINYASRYASKSTGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLTALKKAAVALNPGGSFYLPFNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGRSTATFIKTVLSRISVLGSTFLAILAAGPAVVEQITHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDFDKY 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00770 536 ProSitePatterns Protein secY signature 1. 180 199 IPR030659 -
Viun9g00770 536 FunFam Preprotein translocase subunit SECY, chloroplastic 120 525 - -
Viun9g00770 536 Pfam SecY 181 512 IPR002208 GO:0015031|GO:0016020
Viun9g00770 536 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 121 528 IPR002208 GO:0015031|GO:0016020
Viun9g00770 536 NCBIfam preprotein translocase subunit SecY 128 525 IPR002208 GO:0015031|GO:0016020
Viun9g00770 536 Gene3D SecY subunit domain 120 525 IPR023201 -
Viun9g00770 536 SUPERFAMILY Preprotein translocase SecY subunit 121 519 IPR023201 -
Viun9g00770 536 ProSitePatterns Protein secY signature 2. 272 289 IPR030659 -
Viun9g00770 536 Hamap Protein translocase subunit SecY [secY]. 117 529 IPR026593 -
Viun9g00770 536 PRINTS Preprotein translocase SecY subunit signature 179 199 - -
Viun9g00770 536 PRINTS Preprotein translocase SecY subunit signature 279 302 - -
Viun9g00770 536 PRINTS Preprotein translocase SecY subunit signature 498 516 - -
Viun9g00770 536 PRINTS Preprotein translocase SecY subunit signature 409 431 - -
Viun9g00770 536 PRINTS Preprotein translocase SecY subunit signature 221 244 - -
Viun9g00770 536 PRINTS Preprotein translocase SecY subunit signature 253 278 - -
Viun9g00770 536 PRINTS Preprotein translocase SecY subunit signature 464 482 - -
Viun9g00770 536 PRINTS Preprotein translocase SecY subunit signature 129 147 - -
Viun9g00770 536 PRINTS Preprotein translocase SecY subunit signature 370 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00770 Viun-Chr9 5715006 5718645 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00770 55 536 Chloroplast and Mitochondria Gene Families AT2G18710 84.025 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00770 K10956 - gmx:100810430 929.087