Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00766 ATGCAGCCCTGTAGCAGAGAAATGCAAGGGTTAAACTCCCTCTTCAACTCTTCTTCCCAAATCTCGCTCCAGGACCTCCACACCACCGCCACCACCACCACCACCGCCACCAACCAGATCCAAAATTCACACATCAACCACCACCAACAACCACTGCAACTCCCTCACTTCGACCCAACCTCTCACGATGACTTCCTCGACCAAATGTTCTCCTCCTGCTCCTGGCCCGACCTCAACCCAAACAAGCCCTTCTGGGACCCCAATACCCTCTCCGACCAGACCACTCCCTCCGACAACGACAACAACAATAACACTAACAATAATAATGTCGCTTTCCCCTACGACGAACCCTCCGCCTTGGCCTCCAAGTTCCGCAACCACCAGATCAGCGCCTCCTCCACCAAAAACGCCGCCGCAGCTCTCATGCTCCAGCACCAACTCCTCATGTCCAGAGACTCCCCGCTCCTTCACATGCCGCTTTCCTTACCTCAAAACGACGTCGTCGTCGACGCCTCCTCCTTTAAATCCCCCAATCCCGGCGGTGAGACTTCGGTCCAGGCTCTCTACAACGGCTTTGCCGGATCTCTGCATGGCGCTGGTCAAGCCTCCAACCAGCCTCAGCATTTTCAACATCCTCAGGGAGGTTCTAATCCGATGCAAGGGCAAAATTTCGGTGCGCCGGGTACTGGGGGCGGCGCAACGAACCAAGCTCCGGCGAGTGGCGCGGCGGCTCAGCCGAGGCAGAGGGTTCGTGCAAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCTGAAAGGTTACGAAGGGAGAGAATCGCAGAGAGAATGAAAGCCCTACAGGAACTGGTTCCCAATGCAAACAAGACAGACAAGGCATCGATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTCGCACCCCTTGTTGCTGATATGTCTTCTGAGGGTGGCGGTGACTGCATCCAAGCGAACGGCAACGGCGGCGGTGCTCTCGCGCCGAATTCCAACGGCAACAACAACCAAACGGCGGCGTCAACCTCGAACGACAGCCTGACCATGACGGAGCACCAGGTGGCGAAACTGATGGAGGAGGACATGGGTTCCGCCATGCAGTATCTCCAAGGCAAGGGCCTCTGCCTCATGCCAATTTCTCTTGCCACTGCGATCTCCACCGCCACGTGTCACACCAGGAACCCCTTGATGAACGCCGCCTCCGGCAGCACCCAGATTCCGACGAACGGCGCCCCCGGCACACACGCCAACCCCGCCGTGGCGTCGAACGGCGAAGGCCCGTCCTCTCCGAGCATGTCCGTGCTGACGGTGCAGTCGGCCGTGGTGGGCAACGAGGGCGCCGTGAAGGACGCTGCCTCCGTCTCGAAGCCGTGA 1440 0.5861 MQPCSREMQGLNSLFNSSSQISLQDLHTTATTTTTATNQIQNSHINHHQQPLQLPHFDPTSHDDFLDQMFSSCSWPDLNPNKPFWDPNTLSDQTTPSDNDNNNNTNNNNVAFPYDEPSALASKFRNHQISASSTKNAAAALMLQHQLLMSRDSPLLHMPLSLPQNDVVVDASSFKSPNPGGETSVQALYNGFAGSLHGAGQASNQPQHFQHPQGGSNPMQGQNFGAPGTGGGATNQAPASGAAAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQANGNGGGALAPNSNGNNNQTAASTSNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLMNAASGSTQIPTNGAPGTHANPAVASNGEGPSSPSMSVLTVQSAVVGNEGAVKDAASVSKP 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00766 479 SMART finulus 262 311 IPR011598 GO:0046983
Viun9g00766 479 MobiDBLite consensus disorder prediction 349 369 - -
Viun9g00766 479 MobiDBLite consensus disorder prediction 196 263 - -
Viun9g00766 479 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 73 407 - -
Viun9g00766 479 MobiDBLite consensus disorder prediction 197 242 - -
Viun9g00766 479 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 254 316 IPR036638 GO:0046983
Viun9g00766 479 MobiDBLite consensus disorder prediction 421 455 - -
Viun9g00766 479 FunFam Transcription factor bHLH66 253 318 - -
Viun9g00766 479 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 256 305 IPR011598 GO:0046983
Viun9g00766 479 Pfam Helix-loop-helix DNA-binding domain 261 306 IPR011598 GO:0046983
Viun9g00766 479 Gene3D - 251 313 IPR036638 GO:0046983
Viun9g00766 479 MobiDBLite consensus disorder prediction 84 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00766 Viun-Chr9 5662585 5666272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00766 245 478 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 63.745 5.83e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun9g00766 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00766 - - gmx:100807286 625.935