Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00751 ATGCAAGTTCCAATGGAGATTTTCAAGTGCTTCTACATCAATCTTCTTGCTACCTTCATGGTATCAGCAGTTCTAGCAATCGACCCTTACTCAGAAGCACTCCTCAGCCTAAAAAATGAACTTGTAGATCATGATAACAGCTTGAGCAACTGGGTGGTACCCTCACCAGGAAAATTAACTGGGAAATACTATGTGTGTTCTTGGTCAGGGGTCAAGTGTGACAATGACTCAACCACTGTAACTTCTATAGACCTTTCCATGAAGAAACTCGGAGGTGTATTCTCAGGGAAGCAATTCAGCATCTTCACAAACCTCACTAATCTCAACCTCAGCTACAATTTCTTCTCAGGGAACCTTCCGCCGGAGATTTTCAACCTCACAAGCCTCACAAGCTTGGATATCAGCAGAAACAACTTCTCTGGTTCCTTCCCTGGTGGAATTACCAGGCTCCAAAATTTGGTTGTGCTTGATGCCTTTAGCAACAGTTTTTCAGGGTCATTGCCTGCTGAATTTTCAGAGCTGGCAAACCTTAAAGTTCTCAATCTTGCCGGGAGCTACTTCAGAAACTCAATTCCTTCTGAATATGGTTCTTTCAAAAGCCTTCAGTTTCTTCATCTTGCTGGAAATTCTCTTTCAGGAAGTATACCTCCAGAACTGGGTAACCTCAAAACAGTGACCCATATGGAGATTGGGTACAACCTATACCAGAGTTTCATTCCACCTGAACTAGGTAACATGAGTCAGCTTCAGTATCTTGACATAGCAGGAGCAAATCTATCAGGTCATATACCAAAGCAACTCTCCAACCTCACCAGTTTGCAATCACTTTTCCTGTTCAGAAACCAGCTCACAGGAACAGTGCCGAGTGAGCTCAGTAACATTGAATCCCTCGCAGATTTAGATCTCTCTGATAACTTCCTCTCAGGCTCCATTCCCGAAAGCTTCTCAGCGCTAAAGAACCTAAGATTACTCAGTCTCATGTACAATGACATGAGTGGCATTGTTCCTGAAGGAATTGCTCAACTCCAATCCTTGGAAACTCTTCTCATCTGGAACAATCGCTTCTCTGGGTCACTTCCTCAGAGCTTAGGGAGAAAGTCCAAACTCAAGTGGGTGGATGCTTCCACAAACAGTTTAGTTGGAAGCATACCACCTGATATCTGTGTGAGTGGAGTACTATTTAAGCTAATTCTGTTTTCAAACAAATTCACAGGTCATCTCTCATCAATCTCCAATTGTTCTTCACTCGTTCGCCTTCGCCTAGAAGATAATTCTTTTTCAGGAGAAATCGCTTTGAAATTCACCCATCTTCCTCATATCTTATACGTCGATCTCTCCAGGAACAACTTTGTTGGTGGCATTCCCTCGGATATTTCTCAAGCCACTCAACTGGAGTATTTTAATGTCTCTTATAATCTCCAATTAGGAGGTACCATCCCTGCAAAAACGTGGTCTTTGCCCCAACTTCAAAACTTTTCAGCATCTTCTTGTGGTATTTCTGGTGATCTTCCACTATTTGAGTCCTGCAAATCGATTTCAGTTATTGATCTAGATAACAATAACTTATCTGGGGTCATCCCAAACAGTGCTTCCAAATGTCGAGCTCTTGAGAAAATCAACCTATCCCACAATAGCTTAACAGGTCATATACCTGATGAGCTTGCAAGTGTTCCTGTTCTTGTTGTGGTGGACCTATCAAACAACAACTTCAATGGCCTCATACCTGCCCAGTTTGGTAGTTCTTCAAGTTTGCAACTTCTGAATGTGTCTTTTAACAATATCTCCGGTTCAATACCCACGGGAAAGACATTCAAATTGATGGGAAAAAGTGCATTTATCGGAAATTCAGAGCTATGTGGAGCACCCCTGAGATCATGTTCTGATTCAGATGGAATATTGGGCAGAAAAGGCACATGGAAGATTACACATATTGTGCTACTCTCTGTAGGGTTGCTAATAGTTCTTCTGGGACTAACTTTTGGAGTACTTTATTTGAGAAGGGGGATAAAAAGTCAATGGAAGATGGTATCATTCGTGGGTCTCCCTCAATTCACAGCAAATGATGTCTTGACGAGCCTCACTGCAACAAAACCAACAGAAGTTACATCACCATCACTAGCAGTTACAAAGGTTGTTCTTCCGACAGGAATAACAGTTTTGGTGAAGAAGATGGAATGGGAAACTAGGAGCATCAAGGTTGTGTCAGAATTCATAACGAGACTGGGAAATTCAAGGCACAAGAATTTAATCAGACTATTGGGGTTTTGCCACAACCAGCATTTAGTCTATCTTTTGTATGATTACTTGCCCAATGGGAATTTGGCTGAGAAAATGGAAATCAAATGGGATTGGGCAGCAAAATTCAGAACAGTTGTTGGAATTGCAAGGGGTCTCTGCTTTCTTCACCATGAATGTTACCCAGCAATACCCCACGGAGACTTGAAGCCCAGCAACGTTGTATTTGACGAAAACATGGAACCCCATTTGGCAGAATTTGGGTTCAAACAGGTTTTGAGGTTGAGCAAAGACTCATCACCCACCATAACCAAGTGGGAAGCAGAATACGATGCTGCCACAAAAGAAGAACTGCGAATGGATATCTACAATTTTGGGGAGATGATTCTGGAAATTTTAAGCGGCGGAAGGTTGAGAAATGCAGGAACCAGTATACAGAGCAAACCATGGGAGGATCTCTTGAGAGAAATTTATAATGAGAATGAAGCAAACTCCGGAAGTTCATTGCAAGAGATTAAACTGGTTCTTGAGGTTGCTTTGTTTTGCACCAGAAGCAGGTCATCTGAACAGCCATCAATGGAAGATGTTGTGAAGCATCTGTCAGGGCTAAAGCATATAGATGATGGCAGAAGTTGGAAAGAAGGGCAATAA 2886 0.422 MQVPMEIFKCFYINLLATFMVSAVLAIDPYSEALLSLKNELVDHDNSLSNWVVPSPGKLTGKYYVCSWSGVKCDNDSTTVTSIDLSMKKLGGVFSGKQFSIFTNLTNLNLSYNFFSGNLPPEIFNLTSLTSLDISRNNFSGSFPGGITRLQNLVVLDAFSNSFSGSLPAEFSELANLKVLNLAGSYFRNSIPSEYGSFKSLQFLHLAGNSLSGSIPPELGNLKTVTHMEIGYNLYQSFIPPELGNMSQLQYLDIAGANLSGHIPKQLSNLTSLQSLFLFRNQLTGTVPSELSNIESLADLDLSDNFLSGSIPESFSALKNLRLLSLMYNDMSGIVPEGIAQLQSLETLLIWNNRFSGSLPQSLGRKSKLKWVDASTNSLVGSIPPDICVSGVLFKLILFSNKFTGHLSSISNCSSLVRLRLEDNSFSGEIALKFTHLPHILYVDLSRNNFVGGIPSDISQATQLEYFNVSYNLQLGGTIPAKTWSLPQLQNFSASSCGISGDLPLFESCKSISVIDLDNNNLSGVIPNSASKCRALEKINLSHNSLTGHIPDELASVPVLVVVDLSNNNFNGLIPAQFGSSSSLQLLNVSFNNISGSIPTGKTFKLMGKSAFIGNSELCGAPLRSCSDSDGILGRKGTWKITHIVLLSVGLLIVLLGLTFGVLYLRRGIKSQWKMVSFVGLPQFTANDVLTSLTATKPTEVTSPSLAVTKVVLPTGITVLVKKMEWETRSIKVVSEFITRLGNSRHKNLIRLLGFCHNQHLVYLLYDYLPNGNLAEKMEIKWDWAAKFRTVVGIARGLCFLHHECYPAIPHGDLKPSNVVFDENMEPHLAEFGFKQVLRLSKDSSPTITKWEAEYDAATKEELRMDIYNFGEMILEILSGGRLRNAGTSIQSKPWEDLLREIYNENEANSGSSLQEIKLVLEVALFCTRSRSSEQPSMEDVVKHLSGLKHIDDGRSWKEGQ 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00751 961 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
Viun9g00751 961 SMART LRR_typ_2 342 366 IPR003591 -
Viun9g00751 961 SMART LRR_typ_2 102 126 IPR003591 -
Viun9g00751 961 SMART LRR_typ_2 198 222 IPR003591 -
Viun9g00751 961 SMART LRR_typ_2 318 341 IPR003591 -
Viun9g00751 961 SMART LRR_typ_2 557 580 IPR003591 -
Viun9g00751 961 SMART LRR_typ_2 270 294 IPR003591 -
Viun9g00751 961 SMART LRR_typ_2 437 461 IPR003591 -
Viun9g00751 961 FunFam Leucine-rich repeat receptor-like protein kinase TDR 684 768 - -
Viun9g00751 961 FunFam Leucine-rich repeat receptor-like protein kinase TDR 769 953 - -
Viun9g00751 961 Gene3D Phosphorylase Kinase; domain 1 703 766 - -
Viun9g00751 961 SUPERFAMILY Protein kinase-like (PK-like) 708 949 IPR011009 -
Viun9g00751 961 SMART serkin_6 650 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00751 961 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
Viun9g00751 961 Pfam Leucine rich repeat 296 355 IPR001611 GO:0005515
Viun9g00751 961 Pfam Protein tyrosine and serine/threonine kinase 716 945 IPR001245 GO:0004672|GO:0006468
Viun9g00751 961 Gene3D Transferase(Phosphotransferase) domain 1 767 957 - -
Viun9g00751 961 ProSiteProfiles Protein kinase domain profile. 673 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00751 961 SUPERFAMILY RNI-like 287 600 - -
Viun9g00751 961 FunFam Leucine-rich repeat receptor-like protein kinase TDR 315 628 - -
Viun9g00751 961 Gene3D Ribonuclease Inhibitor 375 630 IPR032675 -
Viun9g00751 961 PANTHER UNNAMED PRODUCT 172 882 - -
Viun9g00751 961 Gene3D Ribonuclease Inhibitor 296 370 IPR032675 -
Viun9g00751 961 SUPERFAMILY L domain-like 63 401 - -
Viun9g00751 961 FunFam Leucine-rich repeat receptor-like protein kinase 27 192 - -
Viun9g00751 961 Pfam Leucine rich repeat N-terminal domain 32 74 IPR013210 -
Viun9g00751 961 Gene3D Ribonuclease Inhibitor 190 295 IPR032675 -
Viun9g00751 961 Gene3D Ribonuclease Inhibitor 29 189 IPR032675 -
Viun9g00751 961 FunFam Leucine-rich repeat receptor-like protein kinase TDR 193 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00751 Viun-Chr9 5505407 5508827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00751 11 946 Receptor kinase-like Gene Family AT5G51350 54.065 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun9g00751 PK_Tyr_Ser-Thr 6e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00751 - - gmx:100782323 1596.25