Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00729 ATGGCTTTTCACGACCATATGGCGCATGAAATCACTTTTCAGCCCTTCACGGAGGACCACCAGCAGATGGGCCAGGGCAGAGACATGCAGCGGCTGCTCCCGCTCTCCGCCGGAGCACCCACGTGGCTGAACGGCAGCAACGCGGTTACGCTTCGGCAGCAGAATTTCCTCCACCTGCAGCCGGAGTCTGCGACGGCGCATCCTAACGATGACGTTCGGGGGAGCATAGATCGGAACCGGACGGAGAGCAACTCGGAACCGGACGATTTGGCGGAATACAAAGCGGACATTCTGGGACACCCGCTTTACGACCAACTCCTGTCGGCTCACGTCTCGTGTCTGAGGATCGCCACGCCTGTTGACCAGCTTCCACGGATCGACGCACAGCTTCAGCAGTCGCAGCGCGTAGTTGACAAGTACTCTGGCCTTGGAAACGGCGTCGTCGATGACAAAGAGCTTGATCAATTCATGACGCATTATGTTATACTGCTCTGTGCTTTCAAAGAACAACTGCAACAACATGTTCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAACAATCTCTTCAAACCTTGACTGGTGTATCTCCCGGAGAAGGAACGGGTGCAACAATGTCAGACGATGAAGAAGACCAGGCTGAGAGTAATGCAAACTTATACGAAGGAAGCATGGATGGTGCTGACAGTCTCAGCTTTGGACCTCTTGTTCCCACCGAAACTGAAAGATCTTTGATGGAACGTGTTAGGCAGGAGTTGAAGCATGAGCTAAAACAGGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGAAGAGCGGGAAAGCTCCCAGGTGACACCACTTCCCTTTTAAAAGCTTGGTGGCAGTCACATTCCAAATGGCCATATCCAACAGAAGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGTTTGCAACTAAAGCAGATAAACAACTGGTTCATAAATCAAAGGAAAAGGAATTGGCATACTAATCCTTCGTCTTCTAGTGGCTCCAAAAGCAAACGCAAGAGTAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA 1095 0.5059 MAFHDHMAHEITFQPFTEDHQQMGQGRDMQRLLPLSAGAPTWLNGSNAVTLRQQNFLHLQPESATAHPNDDVRGSIDRNRTESNSEPDDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGVVDDKELDQFMTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQTLTGVSPGEGTGATMSDDEEDQAESNANLYEGSMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSSGAGETSNQSFM 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00729 364 SMART KNOX1_2 91 135 IPR005540 GO:0003677|GO:0005634
Viun9g00729 364 ProSiteProfiles ELK domain profile. 255 275 IPR005539 GO:0003677
Viun9g00729 364 CDD homeodomain 278 339 IPR001356 GO:0003677
Viun9g00729 364 Pfam KNOX2 domain 147 197 IPR005541 GO:0003677|GO:0005634
Viun9g00729 364 Pfam Homeobox KN domain 295 334 IPR008422 GO:0003677|GO:0006355
Viun9g00729 364 MobiDBLite consensus disorder prediction 60 88 - -
Viun9g00729 364 Pfam KNOX1 domain 93 134 IPR005540 GO:0003677|GO:0005634
Viun9g00729 364 Gene3D - 281 358 - -
Viun9g00729 364 MobiDBLite consensus disorder prediction 71 88 - -
Viun9g00729 364 SMART HOX_1 277 342 IPR001356 GO:0003677
Viun9g00729 364 Pfam ELK domain 255 276 IPR005539 GO:0003677
Viun9g00729 364 ProSiteProfiles 'Homeobox' domain profile. 275 338 IPR001356 GO:0003677
Viun9g00729 364 SMART KNOX2_2 143 198 IPR005541 GO:0003677|GO:0005634
Viun9g00729 364 FunFam homeobox protein knotted-1-like 3 isoform X1 276 337 - -
Viun9g00729 364 SMART ELK_2 255 276 IPR005539 GO:0003677
Viun9g00729 364 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 125 349 - -
Viun9g00729 364 MobiDBLite consensus disorder prediction 199 218 - -
Viun9g00729 364 SUPERFAMILY Homeodomain-like 277 341 IPR009057 -
Viun9g00729 364 MobiDBLite consensus disorder prediction 332 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00729 Viun-Chr9 5407632 5412688 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00729 91 359 Homeobox Transcription Factor Family AT5G11060 82.418 1.93e-164 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Viun9g00729 KNOX2 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00729 - - gmx:100816347 677.167