Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00728 ATGGCTTTTCACGACCATATGGCGCATGAAATCACTTTTCAGCCCTTCACGGAGGACCACCAGCAGATGGGCCAGGGCAGAGACATGCAGCGGCTGCTCCCGCTCTCCGCCGGAGCACCCACGTGGCTGAACGGCAGCAACGCGGTTACGCTTCGGCAGCAGAATTTCCTCCACCTGCAGCCGGAGTCTGCGACGGCGCATCCTAACGATGACGTTCGGGGGAGCATAGATCGGAACCGGACGGAGAGCAACTCGGAACCGGACGATTTGGCGGAATACAAAGCGGACATTCTGGGACACCCGCTTTACGACCAACTCCTGTCGGCTCACGTCTCGTGTCTGAGGATCGCCACGCCTGTTGACCAGCTTCCACGGATCGACGCACAGCTTCAGCAGTCGCAGCGCGTAGTTGACAAGTACTCTGGCCTTGGAAACGGCGTCGTCGATGACAAAGAGCTTGATCAATTCATGACGCATTATGTTATACTGCTCTGTGCTTTCAAAGAACAACTGCAACAACATGTTCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAACAATCTCTTCAAACCTTGACTGGTGTATCTCCCGGAGAAGGAACGGGTGCAACAATGTCAGACGATGAAGAAGACCAGGCTGAGAGTAATGCAAACTTATACGAAGGAAGCATGGATGGTGCTGACAGTCTCAGCTTTGGACCTCTTGTTCCCACCGAAACTGAAAGATCTTTGATGGAACGTGTTAGGCAGGAGTTGAAGCATGAGCTAAAACAGGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGAAGAGCGGGAAAGCTCCCAGGTGACACCACTTCCCTTTTAAAAGCTTGGTGGCAGTCACATTCCAAATGGCCATATCCAACAGAAGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGTTTGCAACTAAAGCAGATAAACAACTGGTTCATAAATCAAAGGAAAAGGAATTGGCATACTAATCCTTCGTCTTCTAGTGGCTCCAAAAGCAAACGCAAGAGTGGTGCAGGTGAAACAAGTAACCAGAGCTTCATGTGA 1092 0.5064 MAFHDHMAHEITFQPFTEDHQQMGQGRDMQRLLPLSAGAPTWLNGSNAVTLRQQNFLHLQPESATAHPNDDVRGSIDRNRTESNSEPDDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGVVDDKELDQFMTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQTLTGVSPGEGTGATMSDDEEDQAESNANLYEGSMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSGAGETSNQSFM 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00728 363 SMART KNOX1_2 91 135 IPR005540 GO:0003677|GO:0005634
Viun9g00728 363 ProSiteProfiles ELK domain profile. 255 275 IPR005539 GO:0003677
Viun9g00728 363 CDD homeodomain 278 339 IPR001356 GO:0003677
Viun9g00728 363 Pfam KNOX2 domain 147 197 IPR005541 GO:0003677|GO:0005634
Viun9g00728 363 Pfam Homeobox KN domain 295 334 IPR008422 GO:0003677|GO:0006355
Viun9g00728 363 MobiDBLite consensus disorder prediction 60 88 - -
Viun9g00728 363 Gene3D - 274 353 - -
Viun9g00728 363 MobiDBLite consensus disorder prediction 71 88 - -
Viun9g00728 363 Pfam KNOX1 domain 93 134 IPR005540 GO:0003677|GO:0005634
Viun9g00728 363 SMART HOX_1 277 342 IPR001356 GO:0003677
Viun9g00728 363 MobiDBLite consensus disorder prediction 332 363 - -
Viun9g00728 363 Pfam ELK domain 255 276 IPR005539 GO:0003677
Viun9g00728 363 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 125 343 - -
Viun9g00728 363 ProSiteProfiles 'Homeobox' domain profile. 275 338 IPR001356 GO:0003677
Viun9g00728 363 SUPERFAMILY Homeodomain-like 277 341 IPR009057 -
Viun9g00728 363 SMART KNOX2_2 143 198 IPR005541 GO:0003677|GO:0005634
Viun9g00728 363 FunFam homeobox protein knotted-1-like 3 isoform X1 276 337 - -
Viun9g00728 363 SMART ELK_2 255 276 IPR005539 GO:0003677
Viun9g00728 363 MobiDBLite consensus disorder prediction 199 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00728 Viun-Chr9 5407632 5412690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00728 91 358 Homeobox Transcription Factor Family AT5G11060 82.721 4.34e-166 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Viun9g00728 KNOX2 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00728 - - gmx:100816347 675.241