Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00720 ATGGCCTTTGCATTGTCACCTTTTGCTCGCCACCCACATGGACAAAAAGGATCTTTTTTCAGAACTTCAACTCCTGACACCACAGATACCACTGTCCAAACTTCCTTTCCTCTAGAAAGCATTTATGAGGACCAGGTGATTGCAGACAAGAAACAAAATCAGATGAATTTGGCTACGGCTCTTCGGTCTGGAGAGTGGTCTGACATAGGAGAACGCCCTTACATGGAGGACACTCACATATGCATTGGAGATTTGGCAAAGAAATTTAATTATAATGCACCTTCTGGGGAAGCTGTTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTACGTGATAATCTGCCAAGATTTATTGTTGAGGATGTTAACTTTCCTTTGGAGCTTGAGAAAGTGGTCAAAAGGTCATTTTTGGAGACTGACACTGCATTCCTAAAATCATCTTCTCAGGAACCTTCCCTTTCTTCTGGTACAACTGCTTTAACTGCAATTATATTTGGAAGGTCTTTACTTGTGGCTAATGTGGGAGACTGTCGAGCTGTCTTGTCCCGCCATGGAAGGGCCATAGAAATGTCTAAAGATCATAGGCCAAACTGTGTGAATGAAAGGACACGGGTTGAGTCTCTAGGTGGCTTCATTGACGATGGTTACCTGAATGGGCAGTTAGGTATAACTCGCGCTATTGGAGACTGGCACCTGGAAGGAATGAAGGGAACGAGTGAAAGAGAAGGGCCATTGAGTGCTGAACCTGAACTTAAATTGATGACATTGACCAAAGAAGATGAATTCTTGATAATTGCTAGTGACGGAATATGGGATGTTTTTAGTAGCCAAAATGCTGTGGATTTTGCTAGGAGGAGGCTACAAGAGCACAATGATGAGAAACTATGCTGCAAGGAAATAGTGCAGGAAGCAATCAAGAGAGAATCAACTGATAACTTGACAGTTGTGATGGTATGTTTCAACTCAGATCCTCCAACACCTGTGGTTGTGGAAAGAACACGAGTAAGAAGAAGCATATCTGCAGAAGGACTTCAGAATCTACGATCCCTGCTAAAAGAATAA 1083 0.4266 MAFALSPFARHPHGQKGSFFRTSTPDTTDTTVQTSFPLESIYEDQVIADKKQNQMNLATALRSGEWSDIGERPYMEDTHICIGDLAKKFNYNAPSGEAVSFYGVFDGHGGKSAAQFVRDNLPRFIVEDVNFPLELEKVVKRSFLETDTAFLKSSSQEPSLSSGTTALTAIIFGRSLLVANVGDCRAVLSRHGRAIEMSKDHRPNCVNERTRVESLGGFIDDGYLNGQLGITRAIGDWHLEGMKGTSEREGPLSAEPELKLMTLTKEDEFLIIASDGIWDVFSSQNAVDFARRRLQEHNDEKLCCKEIVQEAIKRESTDNLTVVMVCFNSDPPTPVVVERTRVRRSISAEGLQNLRSLLKE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00720 360 FunFam Probable protein phosphatase 2C 22 46 330 - -
Viun9g00720 360 CDD PP2Cc 62 327 IPR001932 -
Viun9g00720 360 PANTHER PROTEIN PHOSPHATASE 2C 49 325 IPR015655 GO:0004722|GO:0006470
Viun9g00720 360 MobiDBLite consensus disorder prediction 13 32 - -
Viun9g00720 360 Coils Coil 348 360 - -
Viun9g00720 360 Pfam Protein phosphatase 2C 74 319 IPR001932 -
Viun9g00720 360 ProSitePatterns PPM-type phosphatase domain signature. 101 109 IPR000222 GO:0043169
Viun9g00720 360 MobiDBLite consensus disorder prediction 17 32 - -
Viun9g00720 360 SUPERFAMILY PP2C-like 57 329 IPR036457 -
Viun9g00720 360 ProSiteProfiles PPM-type phosphatase domain profile. 62 327 IPR001932 -
Viun9g00720 360 SMART PP2C_4 52 325 IPR001932 -
Viun9g00720 360 Gene3D - 43 331 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00720 Viun-Chr9 5345600 5348941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00720 21 358 PP2C-type Phosphatase Gene Family AT2G25620 53.936 1.36e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Viun9g00720 PP2C 5.2e-70 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00720 K14803 - gmx:100813157 583.178