Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00701 ATGGAACGTATTAGGCGGCTTCTTGAAGTAGTAGCCTGGAGAGGCGAGCAGCATGAGAGTGACGCGGAGGTTGGAGAAGGTGCAGCGGTGAGTGGGGATGAAGTGGAAGCAATGCAGCAGCAGAAAGATGAGGAAAGAATAGACGAAGGTGGGAAAAGGCGCATGATGATGAAAGGAGCGAAACTGGTAGGTAGAGCATTGGAGGATGTGGAAAGGTGTAACCGTAAGAAAGTTGGTGGAAGACCAAGTTTTTTCGACTGCAACATATGCCTGAGCACAGCAGAAGATCCTGTGTTGACTTGCTGTGGTCACATCTTTTGCTGGCCCTGCTTTTATCACTTGCCATGTTCCTATGCAAATGCAAAGGAGTGCCCTGCTTGTGGCGGAGAGGTCATTGAAACAAACATTATTCCAATTTATGGTAATGCTAATGCTAATGCTGATTCCACTGCCACTCACAGTGATGATCCTGATCTACCTTCTTCCATACTTCCTCCTCGACCTCCTGCACCCAGAATTAGCCGTTTTACTTATCATTACTTTTAG 546 0.4707 MERIRRLLEVVAWRGEQHESDAEVGEGAAVSGDEVEAMQQQKDEERIDEGGKRRMMMKGAKLVGRALEDVERCNRKKVGGRPSFFDCNICLSTAEDPVLTCCGHIFCWPCFYHLPCSYANAKECPACGGEVIETNIIPIYGNANANADSTATHSDDPDLPSSILPPRPPAPRISRFTYHYF 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00701 181 MobiDBLite consensus disorder prediction 147 169 - -
Viun9g00701 181 SUPERFAMILY RING/U-box 80 141 - -
Viun9g00701 181 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 48 172 IPR045103 GO:0005783|GO:0006511|GO:0061630
Viun9g00701 181 SMART ring_2 87 127 IPR001841 -
Viun9g00701 181 Pfam zinc-RING finger domain 87 128 IPR001841 -
Viun9g00701 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 155 IPR013083 -
Viun9g00701 181 ProSiteProfiles Zinc finger RING-type profile. 87 127 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00701 Viun-Chr9 5163673 5165105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00701 37 144 C3H Transcription Factor Family AT3G58030 44.444 6.37e-25 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00701 - - vun:114195918 357.451