Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00687 ATGACGTCACGTTCGGGTCAGGGCAGCAGCGGGAGCAGCAGGACCCGTGTGGGGAAGTATGAGTTGGGTCGGACCCTGGGTGAGGGCAATTTCGCCAAGGTAAAGTTCGCGAGACACGTGGAAACCAGAGAGAACGTCGCCATCAAGATTCTCGACAAGGAGAAAGTTCTCAAGCACAAAATGATTGACCAGATAAAACGAGAAATATCGACGATGAAACTTGTTAGACACCCAAATGTCATACGTATGTACGAGGTGATGGCTAGCAGAACAAAGATATACATTGTATTGGAATTTGTGACTGGTGGAGAGCTGTTTGATAAAATTGCACGCAGCGGGAGGTTGAAAGAAGATGAAGCAAGAAAATATTTTCAACAGCTTATATGTGCTGTGGATTACTGCCATAGCAGAGGTGTTTTTCATAGAGACCTAAAGCCTGAGAATTTGTTGCTGGATGCTAATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCATTGCCTCAACAAGTTCGGGAAGATGGGCTACTTCACACAACATGTGGTACGCCAAATTATGTTGCTCCAGAGGTGATTAACAACAAAGGTTATGATGGTGCAAAGGCAGATCTGTGGTCATGTGGTGTTATTCTCTTTGTTTTAATGGCAGGCTATTTGCCCTTTGAAGAAACCAATCTAACGGCTTTATATAAAAAGATTTACAAGGCTGAGTTCACGTGTCCTCCATGGTTCTCTTCAAGTGCAAAGAAACTAATCAACAGAATACTTGATCCAAATCCTGCCACTAGGATTACATTATCTGAGGTGGTTGAGAATGATTGGTTCAAGAAGGGATATAAGCCTCCCGTATTTGAACAGCCTAGTGTTAGTCTTGATGATGTAAATTGTATTTTCAGCGAATCTTTGGATTCTCAAAATCTCGTAGTTGAGAGGCGTGAAGAGGAGGGGCATGTGGCACCAGCAACAATGAATGCCTTTGAGCTTATATCTAAATCTCAAGGTCTCAACCTTAGTAGTCTGTTTGAGAAGCAAATGGGACTTGTTAAAAGGGAAACACGATTCACATCCAAATGTTCAGCAGATGAAATAATTTCAGAAATTGAGAAAGCTGCAGGACCCCTGGGTTTTGATGTTAAGAAGAACAACTGTAAGTTAAAGATTCAAGGGGAAAAGACTGGACGGAAAGGTCATCTATCTGTGGCCACCGAGATCTTAGAGGTAGCCCCTTCGCTATACATGGTTGAGCTGCGTAAGTCTCAAGGAGATACACTGGAATTTCACAAGTAG 1287 0.4274 MTSRSGQGSSGSSRTRVGKYELGRTLGEGNFAKVKFARHVETRENVAIKILDKEKVLKHKMIDQIKREISTMKLVRHPNVIRMYEVMASRTKIYIVLEFVTGGELFDKIARSGRLKEDEARKYFQQLICAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEETNLTALYKKIYKAEFTCPPWFSSSAKKLINRILDPNPATRITLSEVVENDWFKKGYKPPVFEQPSVSLDDVNCIFSESLDSQNLVVERREEEGHVAPATMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSKCSADEIISEIEKAAGPLGFDVKKNNCKLKIQGEKTGRKGHLSVATEILEVAPSLYMVELRKSQGDTLEFHK 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00687 428 CDD STKc_SnRK3 19 274 - -
Viun9g00687 428 SUPERFAMILY Protein kinase-like (PK-like) 17 294 IPR011009 -
Viun9g00687 428 CDD CIPK_C 324 428 - -
Viun9g00687 428 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Viun9g00687 428 Pfam NAF domain 320 380 IPR004041 GO:0007165
Viun9g00687 428 ProSiteProfiles NAF domain profile. 318 342 IPR018451 GO:0007165
Viun9g00687 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Viun9g00687 428 Pfam Protein kinase domain 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00687 428 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 428 - -
Viun9g00687 428 SMART serkin_6 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00687 428 Gene3D Transferase(Phosphotransferase) domain 1 100 282 - -
Viun9g00687 428 FunFam Non-specific serine/threonine protein kinase 13 316 - -
Viun9g00687 428 ProSiteProfiles Protein kinase domain profile. 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00687 428 FunFam Non-specific serine/threonine protein kinase 11 99 - -
Viun9g00687 428 Gene3D Kinase associated domain 1, KA1 317 428 - -
Viun9g00687 428 FunFam Non-specific serine/threonine protein kinase 317 428 - -
Viun9g00687 428 Gene3D Phosphorylase Kinase; domain 1 9 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00687 Viun-Chr9 5021005 5028223 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00687 3 428 CBL-interacting serine-threonine protein kinases AT1G01140 68.458 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Viun9g00687 Pkinase 3.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00687 - - gmx:100788746 790.03