LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g00684	ATGCCCCCAGCCGCCGGAGCCGTCGCGTTACATTCTTCCCTTTGCTCCACCGCTTCTGAGAAACCGTACTCTCCTCTAAGATCAACCGTTCTGCATGTGGCACCGAAACCCAAAAGCCTTCTCCAAAACCACCCACTTTATCCTCCAACCCACGCCAAACTCTCCCTTGAATTCAAAGAGAAAATTCTGTGTCTCGAGGTAATGGGTGTTGATGCTGGCAAAGCACTCTCCCAAAACCCTGATCTTCGCACAGCCACCATGGAATCCATACAGTCCATCATCACCTTCCTTTTCTCCAATGGCATTCTTGAGAAGGACCTGCCCAGAATCTTTGGCATGTGCCCCAAGATTCTCACCTCTGACATCAAAACTGATCTCACCCCAGTTTTTGATTTCATCTTGAATGAACTCAAAGTCCCTGAAAATAGTTTCAGAAGGGTGATCAATAAGTGCCCAAGATTGCTTACATCCAGTGTGAAAGACCAGCTCAGGCCAGCTTTGGTTTACCTAAGGAGACTTGGATTCAAGGATTTGGGGGCCTTGGCTTATCAAGATTCTGTTCTCTTGGTGTCTAGTGTGGAACACACCCTCATCCCTAAACTTAGATTTTTGGAGACTTTGGGACTTTCCAAGGATGAGATCAGGAGTATGGTGTTGAGATGTCCAGCACTGCTCACTTTCAGTATAGAGAATAATTTTCAACCAAAGTATGGCTATTTTGCTGGGGAAATGGGAAGAAAAGTGGAGGAGCTTAAAGAGTTTCCTCAGTACTTTGCTTTTAGTTTGGAAAACAGGATAAAACCTAGACACACTGAGGTTGTGCAGAGTGGGATCACTTTACCTTTGTCAGTGATGCTTAAAAGCACTGATGAAGAATTTGGGGAGTTGTTAAAGCAGGGGGGTGGGTGA	909	0.4576	MPPAAGAVALHSSLCSTASEKPYSPLRSTVLHVAPKPKSLLQNHPLYPPTHAKLSLEFKEKILCLEVMGVDAGKALSQNPDLRTATMESIQSIITFLFSNGILEKDLPRIFGMCPKILTSDIKTDLTPVFDFILNELKVPENSFRRVINKCPRLLTSSVKDQLRPALVYLRRLGFKDLGALAYQDSVLLVSSVEHTLIPKLRFLETLGLSKDEIRSMVLRCPALLTFSIENNFQPKYGYFAGEMGRKVEELKEFPQYFAFSLENRIKPRHTEVVQSGITLPLSVMLKSTDEEFGELLKQGGG	302

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g00684	302	Pfam	mTERF	188	293	IPR003690	GO:0003690\|GO:0006355
	Viun9g00684	302	Pfam	mTERF	65	176	IPR003690	GO:0003690\|GO:0006355
	Viun9g00684	302	Gene3D	Transcription termination factor 3, mitochondrial	133	299	IPR038538	-
	Viun9g00684	302	FunFam	Transcription termination factor MTEF1, chloroplastic	133	300	-	-
	Viun9g00684	302	SMART	mt_12	215	247	IPR003690	GO:0003690\|GO:0006355
	Viun9g00684	302	SMART	mt_12	108	140	IPR003690	GO:0003690\|GO:0006355
	Viun9g00684	302	SMART	mt_12	145	176	IPR003690	GO:0003690\|GO:0006355
	Viun9g00684	302	SMART	mt_12	179	210	IPR003690	GO:0003690\|GO:0006355
	Viun9g00684	302	SMART	mt_12	248	279	IPR003690	GO:0003690\|GO:0006355
	Viun9g00684	302	PANTHER	CGI-12 PROTEIN-RELATED	36	294	IPR003690	GO:0003690\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g00684	Viun-Chr9	5017921	5019196	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Viun9g00684		mTERF	1.8e-28	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g00684	K15032		-	gmx:100788221	534.643