Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00676 ATGAGCTTTGAAAGCAGAGGGAAGGTGAAAGACACAAGCTTGAGCACATCAGCTGAAAGCAACATGAACAGCAGGAGGGACAAGATACTGGCTCAGTACAGTGCGGATGCTGAGATTCTGGCCGAGTTTGAGCAGTCTGGTGTGTCTGGTAAATCATTTGACTACTCCAGGATGGTCCTTGATCCTCCCAGGTTAGTGTCTGGAGAAAAAATGACTGCATATCTGTCAAAAATCCAAAGGGGTGGCCTTATCCAACCCTTTGGTTGTATGCTTGCAATTGAGGAACCCACTTTTAGGATCATTGGGTACAGTGAGAATTGTTTTCAGTTGTTGGGTTTGGAGAGGCAAATTGACTCTAAGATGTTTGTAAATTTGATTGGGGTTGATGCAACAACCCTTTTCACTCCACCTTCTGGGGCTTCCCTAGCTAAAGCTGTGGCTTCCAGAGAAATTTCTCTTCTGAACCCGATTTGGGTCTATGCAAGGATGACCCAGAAGCCGTTTTATGCCATACTGCATAGGATCGATGTTGGGGTTGTGATTGATTTGGAGCCTGCGCGGTTGAGTGATCCAGCATTGTCACTAGCCGGGGCAGTTCAATCACAGAAGCTGGCTGTGAGGGCTATTTCAAGGCTGCAATCTCTTCCCGGCGAAGATATTGGCTTGTTGTGTGACACAGTTGTTGAGGAAGTGCAGAAGCTTACTGGATATGACAGGGTTATGGTTTATAAGTTTCATGAGGATGATCATGGTGAGGTTGTAGCTGAGATTAGGAGGTCAGATTTGGAGCCTTACTTGGGTTTACATTATCCTGCCACAGATATCCCTCAAGCTTCTCGCTTCTTGTTCAAGCAAAACCGGGTTAGGATGATATGTGATTGCCATGCAAAGCCAGTTAAGGTCATTCAGAGTGAAGAATTAGGGCAACCTCTTTGCTTGGTGAATTCAACCCTTAGGTTACCACATGGTTGTCATACACAGTACATGGCCAACATGGGATCAATTGCCTCTCTGGTGATGGCAATTATAGTCAATGGAAAAGATGCAACAAGGCTTTGGGGTTTGCTAGTTTGTCACCACACTTCACCACGCTATGTTTCTTTCCCGGTTCGCTATGCTTGTGAGTTCCTAATGCAGGCTTTTGGACTGCAACTTTACATGGAGATTCAATTGGCATCACAAATGGCAGAAAAGAGAATGCTTAAAACTCAAACCTTACTGTGTGACATGCTCCTTCGTGATGCACCATTCGGCATTGTGACTCAGTCTCCAAGTATCATGGATCTTGTGAAGTGTGATGGTGCTGCCTTGTTTTATGATGGAAACTGCTGGTTGTTAGGCACATCCCCAACTGAAGCACAGGTAAAAGACATTGCAGAATGGCTACTTAGTAATCATGGGGACTCAACAGGTTTGACAACAGATAGTTTGGCTGATGCTGGTTATCCAGGTGCTGCTTCACTGGGTGATGCTGTTTGTGGCATGGCCACTGCAAGAATCAATTCAAAACATTTTTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAGTCAAATGGGGTGGAGCCAAGCATCATCCAGAGGATAGGGATGATGGAGGAAAAATGAACCCAAGATCATCTTTCAAAGCTTTTCTTGAAGTAGTCAAAAGCAAAAGTTTGCCTTGGGAAGTGTCAGAAATCAATGCTATTCACTCATTACAACTAATAATAAGAGATTCCTTCCAAGACACTGAGATCACAGATTCAAAGACTTCAAACTATGTGCAGAAAACTGACACTGCAGCTGGAAAGATGGATGAACTCAGTTCAGTAGCACTTGAAATGGTGAGATTAATCGAGACTGCAACAGTTCCAATTTTTGGGGTTGATTCAGGTGGCATAATCAATGGATGGAATTCAAAGATTGCTGAATTGACAGGTCTACAAGGCAGTGAAGCTATGGGAAAATCCATGGTAAATGAAATTATACATGCGGACTCATGTGACACTTTTAGAAATACTCTAAGCAGAGCCTTGCAAGTTTTTGCAGGAGAGGAGGACAAAAGTGTTGAGTTGAAAATAAAGCACTTTGGGCTTCAACAGCAAAAGAAAGATGTATATCTTATGGTGAATGCTTGCACTAGTAGGGACTACACAGATTCTGTTGTTGGGGTATGCTTTGTAGGTCAAGACATCACTTATGAGAAAGTGGTCCAAGATAAATTCATCAAGTTGGAAGGTGATTACAAAGCAATCGTGCAGAGTCTGAGCCCACTCATTCCACCCATATTTTCTTCTGATGAGAGTGCATGCTGTTCTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAAAGAGATGAAGTCATAGGAAAGTTGCTTCCTGGTGAAATATTTGGAAGTTTTTGTCGACTAAAAGGTCAAGATACACTGACTAATTTTATGATTTTACTATACCGTGGAATAAGTGGTCAAGATTCTGAGAAGTTACCATTTGGATTTTTTGATAGAAATGGAGAATTTGTGGAGACTTATATAACAGCAAACAAGAGAATTGATGCTGGTGGGAATATGCTTGGCTGTTTTTGCTTCTTGCAGGTTGTAACGCCAGACCTGAATCAGTCCTCTGAAGAACACAAGCCAAGAGGCAGAGAAAACATTTCTGAATCTAAAGAATTGGCTTATATACTGCAAGAGATGAAGAAACCTTTAAATGGCATACGATTCACTCACAAACTTTTGGAAAGTACAACTGTTTCAGAAAACCAAAAACAATTTCTTGACACCAGTGATGCATGTGAAAGACAGATCATGGCAATTATTGAGGATACCAATTTAGGAAGTATTAATGAAGGCTAA 2841 0.4227 MSFESRGKVKDTSLSTSAESNMNSRRDKILAQYSADAEILAEFEQSGVSGKSFDYSRMVLDPPRLVSGEKMTAYLSKIQRGGLIQPFGCMLAIEEPTFRIIGYSENCFQLLGLERQIDSKMFVNLIGVDATTLFTPPSGASLAKAVASREISLLNPIWVYARMTQKPFYAILHRIDVGVVIDLEPARLSDPALSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDTVVEEVQKLTGYDRVMVYKFHEDDHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFKQNRVRMICDCHAKPVKVIQSEELGQPLCLVNSTLRLPHGCHTQYMANMGSIASLVMAIIVNGKDATRLWGLLVCHHTSPRYVSFPVRYACEFLMQAFGLQLYMEIQLASQMAEKRMLKTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALFYDGNCWLLGTSPTEAQVKDIAEWLLSNHGDSTGLTTDSLADAGYPGAASLGDAVCGMATARINSKHFLFWFRSHTAKEVKWGGAKHHPEDRDDGGKMNPRSSFKAFLEVVKSKSLPWEVSEINAIHSLQLIIRDSFQDTEITDSKTSNYVQKTDTAAGKMDELSSVALEMVRLIETATVPIFGVDSGGIINGWNSKIAELTGLQGSEAMGKSMVNEIIHADSCDTFRNTLSRALQVFAGEEDKSVELKIKHFGLQQQKKDVYLMVNACTSRDYTDSVVGVCFVGQDITYEKVVQDKFIKLEGDYKAIVQSLSPLIPPIFSSDESACCSEWNAAMERLTGWKRDEVIGKLLPGEIFGSFCRLKGQDTLTNFMILLYRGISGQDSEKLPFGFFDRNGEFVETYITANKRIDAGGNMLGCFCFLQVVTPDLNQSSEEHKPRGRENISESKELAYILQEMKKPLNGIRFTHKLLESTTVSENQKQFLDTSDACERQIMAIIEDTNLGSINEG 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00676 946 SUPERFAMILY GAF domain-like 199 385 - -
Viun9g00676 946 CDD PAS 615 725 IPR000014 -
Viun9g00676 946 ProSiteProfiles PAS repeat profile. 741 786 IPR000014 -
Viun9g00676 946 FunFam Phytochrome 600 735 - -
Viun9g00676 946 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 379 IPR016132 -
Viun9g00676 946 SUPERFAMILY PYP-like sensor domain (PAS domain) 610 721 IPR035965 -
Viun9g00676 946 SUPERFAMILY GAF domain-like 397 575 - -
Viun9g00676 946 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 186 IPR035965 -
Viun9g00676 946 Pfam PAS fold 607 725 IPR013767 GO:0006355
Viun9g00676 946 Pfam PAS fold 741 861 IPR013767 GO:0006355
Viun9g00676 946 SMART HisKA_10 882 946 IPR003661 GO:0000155|GO:0007165
Viun9g00676 946 Pfam His Kinase A (phospho-acceptor) domain 884 945 IPR003661 GO:0000155|GO:0007165
Viun9g00676 946 Gene3D PAS domain 600 740 - -
Viun9g00676 946 FunFam Phytochrome 754 862 - -
Viun9g00676 946 CDD PAS 752 862 IPR000014 -
Viun9g00676 946 Pfam Phytochrome region 402 577 IPR013515 GO:0006355|GO:0009584
Viun9g00676 946 Gene3D PAS domain 754 865 - -
Viun9g00676 946 NCBIfam PAS domain S-box protein 611 731 IPR000014 -
Viun9g00676 946 CDD HisKA 882 937 IPR003661 GO:0000155|GO:0007165
Viun9g00676 946 Gene3D PAS domain 77 322 - -
Viun9g00676 946 SMART gaf_1 219 399 IPR003018 GO:0005515
Viun9g00676 946 Gene3D - 394 567 IPR043150 -
Viun9g00676 946 Gene3D - 200 550 IPR029016 -
Viun9g00676 946 MobiDBLite consensus disorder prediction 1 21 - -
Viun9g00676 946 ProSiteProfiles PAS repeat profile. 604 673 IPR000014 -
Viun9g00676 946 PANTHER OS08G0260000 PROTEIN 71 943 - -
Viun9g00676 946 FunFam Phytochrome 394 524 - -
Viun9g00676 946 Pfam GAF domain 219 389 IPR003018 GO:0005515
Viun9g00676 946 Pfam PAS fold 73 186 IPR013654 GO:0006355
Viun9g00676 946 PRINTS Phytochrome signature 607 623 IPR001294 GO:0006355|GO:0009584
Viun9g00676 946 PRINTS Phytochrome signature 626 641 IPR001294 GO:0006355|GO:0009584
Viun9g00676 946 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Viun9g00676 946 PRINTS Phytochrome signature 703 720 IPR001294 GO:0006355|GO:0009584
Viun9g00676 946 PRINTS Phytochrome signature 723 743 IPR001294 GO:0006355|GO:0009584
Viun9g00676 946 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Viun9g00676 946 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Viun9g00676 946 PRINTS Phytochrome signature 419 439 IPR001294 GO:0006355|GO:0009584
Viun9g00676 946 PRINTS Phytochrome signature 537 555 IPR001294 GO:0006355|GO:0009584
Viun9g00676 946 PRINTS Phytochrome signature 504 523 IPR001294 GO:0006355|GO:0009584
Viun9g00676 946 SUPERFAMILY PYP-like sensor domain (PAS domain) 755 857 IPR035965 -
Viun9g00676 946 SMART pas_2 740 810 IPR000014 -
Viun9g00676 946 SMART pas_2 606 673 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00676 Viun-Chr9 4992858 4996715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00676 1 946 Histidine Kinase Gene Family AT4G18130 64.405 0.0 1278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00676 K12123 - gmx:100808192 1758.04