Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00671 ATGAGGCAGGCTTTTGATCCTTCTTCTCTGGGTCCTTCCAAGATTCCATCTATAAAAATACCTGGAAAATTGGGGAATGGTACGTGGGAGGCTTTGTCTGGATCTGATTCCTACCATGCTTCATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGTACTTCCGCATGAAAAATTGAACTTGAATGAAACTGAAAATGGTTATCAATCTATTGATGACATCTCATCTGAATTTAAGAAGCTCCATCAAGATGCAGAGGGAGATGGTTCACTTGAAGATGGTGGTACTCATGCTGTTGGACCCGTGCTTCCTGATGATGAAGAGGAGCTCTTAGCCGGCATAATGGATGATTTTGACCTTAGTGGTTTGCCTGGATCCCTTGAGGACTTGGAAGAGTATGATCTGTTTGGTAGTGGTGGAGGTATGGAACTAGAAACTGATCCGCAGGAAAGTCTTTCTGTGGGTATTTCTAAGTTAAGCTTTGCTGATAGTACTGTTGGCAATGGTTTGCCTCATTATTCTTTTCCTAATGGTGTGGGAACTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTATTTGTTCGTAATATTAACAGTAATGTGGAGGACTCGGAGCTGAGAGCCCTTTTTGAGCTATATGGTGATATTAGAACCCTATATACTGCATGCAAACATCGGGGTTTTGTTATGATATCCTATTATGACATCCGTGCTGCTAGAACAGCTATGCGAGCATTACAAAACAAACCTCTGCGGCGCCGGAAACTAGATATTCACTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATAAACCAAGGAACATTGGTAGTTTTCAATCTGGATCCATCTGTTTCAAATGAAGACCTACGCCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTCATTGAATTTTATGACGTCAGAGCTGCAGAAGCAGCTCTTAAATCATTGAACAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTCGAAGAAATTTGATGCTCCAATTGAACCAAGAGCTTGATCAAGATGAATCTCGGAGTTTTCGATATCAAGTGGGTTCACCTGTAGCTAACTCTCCTCCAGGTAACTGGTTACAGTTCAATAGCCCTGTTGAGCAGAATTCAATGCAAAATATCAGTCACTCTCCTGGTTCTAGAATCCTGAGCCCAACAACAGGCAATCATTTACCTGGATTAGCTTCAATTTTGCAACCACAAGTATCTAATACTGTGAAGGCTGCTGCTATTGGCAATGACTTGGGAAGAAGCGGTCAAGGAGAGCACATATTTACCGGCTTGAATTCTTCAGAAGGAGCTAGTTTTCAATCACATTCGCTCCCAGAGCCAAAATTCAGCCAGTATCGTGGAGCGTTGTCCTCATTTGCTCCATCAACATCAAATGGATCCTCAGTGGAGACTTTGTCAGGGCCACAGTTTCTATGGGGAAGCCCAACCCTCTACTCGGAGCATACCAAACCTTCAGCAGCTTGGCCAAGATCATCTGTGGGGCATCCATTTACATCGAATGGAAAAAGCCATGCCTTCCCCTTTTCTACTCAGAATAGCTCTTTTGTTGGTTCATCCCAGCATCATCACAATCATCACGTTGGCTCTGCCCCATCAGGTTTGCCTTTTGAGAGACACTTTGGTTTCCATCCAGAGTCATCTGAAACTTCATTCATGAATAATGTTGGTTATGGAGGCATGAGTCTAGGGCACACTGATGGAAATTACATGGTTAATGTGGGTGGATCTGTTAATGCTAACATCACTATCCCGAGAAATATATCTGATAATGGGTCATCAAACTTCAGAATGAGATCTCCGAGGCTTAGCCCTGTGTACTTGGGAAATGGTCCTTATCCAGGACTTTTACCTTCCACTTTGGAGGGTTTGGCTGACCGTGCTCGGAGTAGATGGATGGAGAACAATGTGAGCCAGGCTGATAGCAAAAAGCAATTTCAGCTTGATTTGGATAAAATTAAAAGTGGTGAAGATACCAGGACTACATTAATGATAAAGAATATTCCAAACAAATACACCTCAAAAATGTTATTAGCCGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTATCTGCCAATTGACTTTAAGAATAAATGCAATGTGGGCTATGCATTTATCAATATGCTGTCACCCTCTCTTATTATTCCATTCTACGAGACATTCAACGGGAAGAAATGGGAGAAATTTAACAGCGAAAAAGTTGCTTCTTTGGCATATGCTCGAATTCAAGGAAAGTCTGCCCTTGTGAGCCACTTTCAAAATTCAAGTTTGATGAATGAAGATAAGCGATGTCGTCCTATTCTTTTCCACTCAGAGGGTTCTGAAGCTGGTGATCTGATTGTACAAGAGCATCTTCCCGCCAACCCCAACAATGTAAACATTCAGGGACTAAGGTCAAGTGAGTTACATTCAAGTGATTTTGCAGGCAGCCCTCCCAACGCAGACCCTTCTGCAAGCTTGGATGCAAAATAA 2586 0.4258 MRQAFDPSSLGPSKIPSIKIPGKLGNGTWEALSGSDSYHASSDASLFSSSLPVLPHEKLNLNETENGYQSIDDISSEFKKLHQDAEGDGSLEDGGTHAVGPVLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQESLSVGISKLSFADSTVGNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFELYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPVANSPPGNWLQFNSPVEQNSMQNISHSPGSRILSPTTGNHLPGLASILQPQVSNTVKAAAIGNDLGRSGQGEHIFTGLNSSEGASFQSHSLPEPKFSQYRGALSSFAPSTSNGSSVETLSGPQFLWGSPTLYSEHTKPSAAWPRSSVGHPFTSNGKSHAFPFSTQNSSFVGSSQHHHNHHVGSAPSGLPFERHFGFHPESSETSFMNNVGYGGMSLGHTDGNYMVNVGGSVNANITIPRNISDNGSSNFRMRSPRLSPVYLGNGPYPGLLPSTLEGLADRARSRWMENNVSQADSKKQFQLDLDKIKSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKSALVSHFQNSSLMNEDKRCRPILFHSEGSEAGDLIVQEHLPANPNNVNIQGLRSSELHSSDFAGSPPNADPSASLDAK 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00671 861 Gene3D - 278 377 IPR012677 -
Viun9g00671 861 FunFam MEI2-like protein 5 isoform 2 183 277 - -
Viun9g00671 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 267 IPR000504 GO:0003723
Viun9g00671 861 CDD RRM3_MEI2_like 698 783 IPR034454 -
Viun9g00671 861 SUPERFAMILY RNA-binding domain, RBD 191 354 IPR035979 GO:0003676
Viun9g00671 861 Pfam RNA recognition motif 2 695 791 IPR007201 -
Viun9g00671 861 CDD RRM2_MEI2_like 278 348 - -
Viun9g00671 861 MobiDBLite consensus disorder prediction 1 24 - -
Viun9g00671 861 SUPERFAMILY RNA-binding domain, RBD 697 781 IPR035979 GO:0003676
Viun9g00671 861 Gene3D - 183 277 IPR012677 -
Viun9g00671 861 SMART rrm1_1 280 348 IPR000504 GO:0003723
Viun9g00671 861 SMART rrm1_1 195 263 IPR000504 GO:0003723
Viun9g00671 861 SMART rrm1_1 697 773 IPR000504 GO:0003723
Viun9g00671 861 PANTHER RNA RECOGNITION MOTIF-CONTAINING 42 813 - -
Viun9g00671 861 MobiDBLite consensus disorder prediction 841 861 - -
Viun9g00671 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 260 IPR000504 GO:0003723
Viun9g00671 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 346 IPR000504 GO:0003723
Viun9g00671 861 CDD RRM1_MEI2_like 193 269 IPR034453 -
Viun9g00671 861 FunFam Protein MEI2-like 1 278 373 - -
Viun9g00671 861 MobiDBLite consensus disorder prediction 80 99 - -
Viun9g00671 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 352 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00671 Viun-Chr9 4983057 4990286 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00671 189 387 Eukaryotic Initiation Factors Gene Family AT1G71770 25.561 2.34e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00671 - - gmx:100800877 1598.18