Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00664 ATGGTTGGAAGTTTCCAAGATCAAAAATCGAAAAATATGGGTCGTCCAAAATTGATCTTGAAACCCATCACAAATAAGAAAGATCGTGATTTAGCTTTGATGAAGAGAAAGAAGGCATTAATGAAGACAATATCTGAATTTTGTAGTGTGTGTGGAGTGAAAGCTTGTTTGATTATATATGATGGCAAAGGTGATTCTCCGCCATTGACTTGGCCCCAAGACCCCATTGAGATGCACTCCATCATCCAGAGGTATGAGCGTATAATGTTTGAGAAAATTCCCAAGAACTTTGATCTCAATAATTTTTTTGAGATTAGGAAGAACACGGTTGACACTGAGATTTCCAAAGTTCAAAGAGAGATCCTTGACATCAAATATCCCACTTGGCATCCATGCTTCAACAACCTTGGTGCTGAAGAATTGAAGAATTTCATAGCTGGATTGGACACTAAGCTTGAAGCTTGTAATCAACGAACAATGATGTTCAAATGCAAGAAACAAAATGAAGCACAATTCATCAATTTCAAGCAATGTCTGATTCAACCAGATTGTGTTGCTCCAAACCCAATCCAACCGAGTTTCATGCAGGATATCTTCCAAAACCAACTTCTTCTTGCTCCAATGAACACACTTAATTGTAACCTTGCACCATCTTTCCAATTCAATCTTGAAAAAGGCTCTAGTTCTCAATCCCTAAAGCTGAATTTTGATCCAAATCTCATGCGATTGAAGGCAGAGAACAGAGGGATGGTGGATACAGCCAATGCATGCCAAATTGATGGGCTTGAAAATCCTTCAAATAAATTTGATGTGCCTTCTGATCTACTTGATGAGTCTATGAATCTTTTTGACCAATTTGGTGAAATACAAAGTTTGAATCAACATTGGGGGAATATTCAACATGATGCACATATGATTGGAGGAAGTATCACAACAATGAATGGAAATCAATGCAATCCAGAGTCCTCTCTTTGCAATTACAATGGAGTTATGCAATTCTATAACTATGATGCATCATTGCAGAATATTGGTTTTCAGTAA 1041 0.3727 MVGSFQDQKSKNMGRPKLILKPITNKKDRDLALMKRKKALMKTISEFCSVCGVKACLIIYDGKGDSPPLTWPQDPIEMHSIIQRYERIMFEKIPKNFDLNNFFEIRKNTVDTEISKVQREILDIKYPTWHPCFNNLGAEELKNFIAGLDTKLEACNQRTMMFKCKKQNEAQFINFKQCLIQPDCVAPNPIQPSFMQDIFQNQLLLAPMNTLNCNLAPSFQFNLEKGSSSQSLKLNFDPNLMRLKAENRGMVDTANACQIDGLENPSNKFDVPSDLLDESMNLFDQFGEIQSLNQHWGNIQHDAHMIGGSITTMNGNQCNPESSLCNYNGVMQFYNYDASLQNIGFQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00664 346 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Viun9g00664 346 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 64 IPR002100 GO:0003677|GO:0046983
Viun9g00664 346 SUPERFAMILY SRF-like 13 95 IPR036879 GO:0003677|GO:0046983
Viun9g00664 346 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Viun9g00664 346 Gene3D - 25 109 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00664 Viun-Chr9 4942930 4944354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00664 13 162 Type I MADS-box Gene Family AT5G55690 29.032 2.02e-15 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun9g00664 SRF-TF 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00664 - - vra:106760100 562.377