Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00606 ATGAGGAGCCAACTTGTGTGTAATGGCTGTAGGAACATCTTGGTTTACCCTAGAGGAGCATCCGATGTTTGCTGTGCACTGTGTCACACTGTTTCCTCTGTTCTTCCTCCTGGAATGGAAGTGTCACAAATTTATTGTGGAGGCTGTAGGACATTGCTAATGTACGCACGTGGTGCTACAAGTGTGGGATGTTCCTGCTGTCACAGTATTAACCTTGTACCCGAGTCTAATCAAGTCAGCCATATCAATTGCCGGAACTGCCGGACCATACTCATGTATCCTTATGGAGCTCCCTCAGTCAAATGTGCAATATGTCACTATATTACTAGTGTCGGTATTACCAATGGAAGGCTTCCAGTTCCTGTACAGAGACCAAATGGAACAGTATCTTCTACTTCATCATCAATGCCTCATTCTCGGAGCCAAACTGTCGTAGTAGAAAATCCTATGTCTATTGATTCGAGTGGGAAATTGGTGAGCAATGTTGTCGTGGGCGTTACAACAGATAAAAAATGA 516 0.4419 MRSQLVCNGCRNILVYPRGASDVCCALCHTVSSVLPPGMEVSQIYCGGCRTLLMYARGATSVGCSCCHSINLVPESNQVSHINCRNCRTILMYPYGAPSVKCAICHYITSVGITNGRLPVPVQRPNGTVSSTSSSMPHSRSQTVVVENPMSIDSSGKLVSNVVVGVTTDKK 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00606 171 NCBIfam zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Viun9g00606 171 NCBIfam zinc finger domain, LSD1 subclass 4 32 IPR005735 -
Viun9g00606 171 NCBIfam zinc finger domain, LSD1 subclass 81 111 IPR005735 -
Viun9g00606 171 PANTHER PROTEIN LSD1 3 170 IPR040319 -
Viun9g00606 171 SUPERFAMILY Multiheme cytochromes 21 106 IPR036280 -
Viun9g00606 171 Pfam LSD1 zinc finger 7 31 IPR005735 -
Viun9g00606 171 Pfam LSD1 zinc finger 46 70 IPR005735 -
Viun9g00606 171 Pfam LSD1 zinc finger 84 108 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00606 Viun-Chr9 4475282 4486300 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Viun9g00606 zf-LSD1 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00606 - - gmx:100776394 284.648