Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00605 ATGAGGAGCCAACTTGTGTGTAATGGCTGTAGGAACATCTTGGTTTACCCTAGAGGAGCATCCGATGTTTGCTGTGCACTGTGTCACACTGTTTCCTCTGTTCTTCCTCCTGTTGAACTTGATTACATCTCGGGGAACATTAGATTTCCTGGTGCCCTTACAGGAATGGAAGTGTCACAAATTTATTGTGGAGGCTGTAGGACATTGCTAATGTACGCACGTGGTGCTACAAGTGTGGGATGTTCCTGCTGTCACAGTATTAACCTTGTACCCGAGTCTAATCAAGTCAGCCATATCAATTGCCGGAACTGCCGGACCATACTCATGTATCCTTATGGAGCTCCCTCAGTCAAATGTGCAATATGTCACTATATTACTAGTGTCGGTATTACCAATGGAAGGCTTCCAGTTCCTGTACAGAGACCAAATGGAACAGTATCTTCTACTTCATCATCAATGCCTCATTCTCGGAGCCAAACTGTCGTAGTAGAAAATCCTATGTCTATTGATTCGAGTGGGAAATTGGTGAGCAATGTTGTCGTGGGCGTTACAACAGATAAAAAATGA 567 0.4409 MRSQLVCNGCRNILVYPRGASDVCCALCHTVSSVLPPVELDYISGNIRFPGALTGMEVSQIYCGGCRTLLMYARGATSVGCSCCHSINLVPESNQVSHINCRNCRTILMYPYGAPSVKCAICHYITSVGITNGRLPVPVQRPNGTVSSTSSSMPHSRSQTVVVENPMSIDSSGKLVSNVVVGVTTDKK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00605 188 NCBIfam zinc finger domain, LSD1 subclass 98 128 IPR005735 -
Viun9g00605 188 NCBIfam zinc finger domain, LSD1 subclass 60 90 IPR005735 -
Viun9g00605 188 NCBIfam zinc finger domain, LSD1 subclass 4 32 IPR005735 -
Viun9g00605 188 SUPERFAMILY Multiheme cytochromes 21 123 IPR036280 -
Viun9g00605 188 Pfam LSD1 zinc finger 63 87 IPR005735 -
Viun9g00605 188 Pfam LSD1 zinc finger 7 31 IPR005735 -
Viun9g00605 188 Pfam LSD1 zinc finger 101 125 IPR005735 -
Viun9g00605 188 PANTHER PROTEIN LSD1 3 36 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00605 Viun-Chr9 4475278 4486300 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Viun9g00605 zf-LSD1 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00605 - - gmx:100776394 273.863