Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00603 ATGGAGCAGTTGAAATTGGCTACAAATTCTGACGCCAAAGAGGATAACCCTTTGGAGAACAAGCCAAAAAATAGCAACGCACTTGAGTCTTCTGACAGTCTGAGAAATAGAAAGATATCAGCTCGATGGGATCCAGTTGGAGCATGTCGGCCTATAATTGAAGAAGCACCTGTTTTTTATCCGACTATTGAAGAATTTGAAGACACACTCAGTTACATAGCAAAGATACGACCCCTAGCTGAACACCATGGCATATGTAGGATTGTTCCTCCAGCTTGCTGGGTTCCACCCTGTCCTCTTAAGGAGAAAGATCTATGGGAAAATGCTGAATTTCCCACCCGTATTCAGCAAATTGATTTGCTTCAAAATAGGGAACCTATGAAGAAAAAATGTAGGGGAAGGAAGCGAAAACGTAGAAGGCTCTCCAGAACAGGCACATGTAGGAGGAAGCCTGCCAGTGCAGCTTCTCATGCTAAGAATGCTTCTGATTCTGAAGAGAAATTTGGGTTCCAATCAGGATCAGACTTCACGCTTAAAGACTTCCAGCAGTTTGCTGATTATTTTAAGGAATGCTATTTTGGGTTGAAAGATGCTGATAGAGACAGAACAGTTAGTGACAGTGACCATCAGAAGAGATGGGAGCCCTCTGCGGAAGAAATTGAAGGTGAATACTGGCGAATAGTTGAGCAACCAAGTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTTCCTAAGGCATCATCCATAACAACGAGTGACTCAGCTCAATATGCCCTGTCTGGTTGGAATCTGAACAATTTTCCCCGACTGCCAGGTTCTGTACTAAGCTATGAAGGAAGTGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGCATGTTGAGGACCATCACCTTTATTCACTAAACTATTTGCACTGGGGTGACCCTAAAGTATGGTATGGTGTACCTGGAAGCCATGCACAAGCCTTGGAAAATGCAATGAGGAAGCACTTGCCTGATTTATTTGATGAACAACCAAATCTACTAAATGAACTGGTTACCCAGTTTTCTCCTTCTATTCTTAAATCTGAGGGAGTACCCGTGTATCGCACAGTCCAGCATTCTGGGGAATTTGTTATTACCTTTCCGAGGGCTTATCATTCTGGCTTTAATTGTGGCTTCAACTGTGCAGAGGCAGTGAATGTGGCTCCTATTGATTGGTTAATGCATGGACAGAATGCTGTTGAAATTTACAGTTCACAATGCCGTAAGACATCGTTGTCCCATGACAAGCTGTTATTTGGATCAGCCCTGGAAGGTGTACGGGCCATTACAGAGCTAGCTCTTGGAAAGGAATCTCCAAAAAATTTGAAATGGAGAAGTGTCTGTGGGAAAGATGGAGATCTTACCAAGGCAGTTAAGGCAAGGATAAAGATGGAAGATGAAAGGCTAGATTGTCTTCCAACTCATCTTAAGTTGCTCAAGATGAACAGTGACTTTGATTTGTACACGGAAAGAGAATGCTTCTCTTGCTTCTATGATTTGCACTTATCTGCTGCGGGTTGTGAGTGCTCTCCTGACAGATATTCTTGTCTTAAGCATGCTAATTTGTTCTGCTCATGCGCAATGGAGAAAAGATTTGTTCTGCTACGATATACTAGAAATGAGCTAACTAAACTGCTTGAAGCATTAGAAGGAGAGTCACATGCTATTAAGGTGTGGGCAAATAAAAACTGTGGAATGGTTTCTGTCAATGCCAATGAGGTTTGCATAGATAAATCAGATGTTGAGAAATATGTCTACAAAACCAAGAATTGTGAAGAAATGGATAGCTTAAATGGCTGTGAGGGAACCAAGGATAGGTCAAATTTAAACACACCAAGTAGTCCTAATAGTCATATTACTTCTGATATAGTGCAGTCTGAGTCTCACCCTGTAACTTCTAGCGCAGCATATGACAGTATAGATAGTCATAATGACAATAATAGTGATAAAAAGTTTGTCACCGACAAGGAATATAAAATGGATCAGGATGGTTATCTGGATTTGAATCTTGATGTTTTCTCTGGTGAAAATGAAAATCATGTGCTGGATATTGCTGATAACCATCACAGCGAAGGTGTTTCAGTAGAGGAAAAAGTATGCTATTCAGAGGCCAAAAAGGAAGAAGACAGCATGGAACTTGGTGGTGAGGGTAACTTATCAAACTCGATTTCTGTTCTAAACACATATTTTTCGTCAAGTTCAAAGGGCAATCACAAGTATTGTACATTTGATGGTGGAAAATTTGAGGTGGATCTGCAAACAGATTCTGGAAAGGTTCACAATAATCTATCTAAAACAGGAGCCATAGACACCACAGATACTCACATGGATTTGACAGATGAAAGCTGCTTGGTACGGATGTTTGGTACTTCTGTCGAGCCTATAAGTTTGGGATCTGTTGTTCATGGAAAGCTGTGGTGTAGTAAGCATGCGATATATCCAAAGGGATTCAAGAGTAGAGTTCTCTTCTTTAGCATTCTTGATCCAACGATAATCTGCAGCTATATTTCTGAAGTCATTGATGCTGGATTTCTTGGACCCCTTTTCAAGGTTACCATGGAAGATTGTCCAAGTGAGGCTTTCACAGATACCTCATCAGACAATTGCTGGGAATCAGTTCTGAAGAGATTACATCATGAAATTAAGAGGCGGAGGAGTCTAGCTGAACTAGAATTTCCTACCTTAGAGCTCTTGAAAGGCATTAATGGTCATAGAATGTTTGGCTTCCTTTTACCATCAATTATTCAGGCCATCGAAGTTCAAGATCCTTGTCATATGTGTGTAGAGTACTGGAATCACAAAGTTGTCCCTTCAGGCAGTGTTGTTGATAACTTGACCTACGGTTCCAGAAGCCCTTTTGGTGATATGAATACCAAAATTTTTGGTATCAATTTGATTAAGCATAACTTTTTTGAAGAGATGAAACAAATACTACAAAGGGCAAGCCCTGATGAGTTAAGCACACTACATAAGTTACTCAGCTCTGATGCATGGTACTGTGAGTGGAAAGTGACATTGATGGCACTGATGGATGAGATCAGGAGAGCTTGTCAATGA 3138 0.4101 MEQLKLATNSDAKEDNPLENKPKNSNALESSDSLRNRKISARWDPVGACRPIIEEAPVFYPTIEEFEDTLSYIAKIRPLAEHHGICRIVPPACWVPPCPLKEKDLWENAEFPTRIQQIDLLQNREPMKKKCRGRKRKRRRLSRTGTCRRKPASAASHAKNASDSEEKFGFQSGSDFTLKDFQQFADYFKECYFGLKDADRDRTVSDSDHQKRWEPSAEEIEGEYWRIVEQPSDEVEVYYGADLETGALGSGFPKASSITTSDSAQYALSGWNLNNFPRLPGSVLSYEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHAQALENAMRKHLPDLFDEQPNLLNELVTQFSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPIDWLMHGQNAVEIYSSQCRKTSLSHDKLLFGSALEGVRAITELALGKESPKNLKWRSVCGKDGDLTKAVKARIKMEDERLDCLPTHLKLLKMNSDFDLYTERECFSCFYDLHLSAAGCECSPDRYSCLKHANLFCSCAMEKRFVLLRYTRNELTKLLEALEGESHAIKVWANKNCGMVSVNANEVCIDKSDVEKYVYKTKNCEEMDSLNGCEGTKDRSNLNTPSSPNSHITSDIVQSESHPVTSSAAYDSIDSHNDNNSDKKFVTDKEYKMDQDGYLDLNLDVFSGENENHVLDIADNHHSEGVSVEEKVCYSEAKKEEDSMELGGEGNLSNSISVLNTYFSSSSKGNHKYCTFDGGKFEVDLQTDSGKVHNNLSKTGAIDTTDTHMDLTDESCLVRMFGTSVEPISLGSVVHGKLWCSKHAIYPKGFKSRVLFFSILDPTIICSYISEVIDAGFLGPLFKVTMEDCPSEAFTDTSSDNCWESVLKRLHHEIKRRRSLAELEFPTLELLKGINGHRMFGFLLPSIIQAIEVQDPCHMCVEYWNHKVVPSGSVVDNLTYGSRSPFGDMNTKIFGINLIKHNFFEEMKQILQRASPDELSTLHKLLSSDAWYCEWKVTLMALMDEIRRACQ 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00603 1045 Gene3D - 815 955 - -
Viun9g00603 1045 Pfam jmjN domain 57 90 IPR003349 -
Viun9g00603 1045 SMART cupin_9 265 431 IPR003347 -
Viun9g00603 1045 MobiDBLite consensus disorder prediction 1 32 - -
Viun9g00603 1045 Pfam JmjC domain, hydroxylase 298 414 IPR003347 -
Viun9g00603 1045 MobiDBLite consensus disorder prediction 629 676 - -
Viun9g00603 1045 ProSiteProfiles FYR domain FYRC motif profile. 871 961 IPR003889 GO:0005634
Viun9g00603 1045 ProSiteProfiles JmjC domain profile. 265 431 IPR003347 -
Viun9g00603 1045 MobiDBLite consensus disorder prediction 128 146 - -
Viun9g00603 1045 PANTHER LYSINE-SPECIFIC DEMETHYLASE 52 737 - -
Viun9g00603 1045 MobiDBLite consensus disorder prediction 629 669 - -
Viun9g00603 1045 FunFam Putative lysine-specific demethylase JMJ16 817 955 - -
Viun9g00603 1045 ProSiteProfiles FYR domain FYRN motif profile. 811 869 IPR003888 GO:0005634
Viun9g00603 1045 Gene3D Cupin 41 415 - -
Viun9g00603 1045 Pfam F/Y-rich N-terminus 822 866 IPR003888 GO:0005634
Viun9g00603 1045 SMART JmjN_1 55 96 IPR003349 -
Viun9g00603 1045 SMART fyrn_3 825 869 IPR003888 GO:0005634
Viun9g00603 1045 SMART fyrc_3 875 967 IPR003889 GO:0005634
Viun9g00603 1045 SUPERFAMILY Clavaminate synthase-like 232 446 - -
Viun9g00603 1045 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Viun9g00603 1045 MobiDBLite consensus disorder prediction 128 167 - -
Viun9g00603 1045 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Viun9g00603 1045 Pfam F/Y rich C-terminus 873 960 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00603 Viun-Chr9 4432591 4440418 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00603 64 1040 JUMONJI Transcription Factor Family AT4G20400 46.928 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun9g00603 JmjC 2.5e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00603 K11446 - gmx:100801775 1766.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00603 9 4432591 4440418 Viun9g00603 9 4432591 4440418 ECH