Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00594 ATGGAGGCTCAATTAGAAGGGAAAAATCAGTATTTGTATGGACCTGTGGTGCCAGAGATGAAGAGTGTTGGGAAGAGAAGTTTGGAGTGGGATTTGAATGATTGGAAGTGGGATGGGGATCTTTTCACTGCTACGCAACTGAATTCAGTGCCGTCAGATTGTAGGAGTCGTCAGCTGTTTCCTGCTGATCCTGAAATTCTTGCAACTGGTGATGCTTCTAACAGTTTGTCTTCTGCATATGATGATGTTAACCTTGCGGAAGGAAGGAGAGAATTGGAGAAGAGGAGGAGAGGTGTTGCTGATGAAGGTGGGGTGGAGATGAATGATGGAGCTGGTTCTCTTAATTTGAACCTTGGGGTCCAAGTATACCCTATCATAGAAGGGGAGGAAAAAAGTGGAAAGAAGACAAAGATAACTGGGAGTACTTTGAACAGGGCTGTTTGTCAGGTGGAAGATTGTAGGGCTGATCTTAGTAATGCGAAGGATTATCACCGCCGCCACAAAGTTTGTGATATGCATTCTAAGGCAAGCAAGGCACTAGTTGGAAATGTTATGCAGAGATTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAATTTGATGAAGGGAAGAGAAGTTGTCGAAGGCGTCTGGCAGGCCACAATAAGAGGAGGAGGAAAACGCATCCTGATGCTAGTGTAGTTAATGACGGCTCTGTGAATGAAGAAAAGGGCAGTAGCTATCTGTTAATGAGTCTGCTAAGGATACTGTCCAATATGCACTCAAATGGCTCAGATAATATGACAAGCCAGGATGTTCTATCTCATCTGCTGAGAAACCTGGCAAGTCTGGCTGGAACAATTAATGGAAGAAATATAGTGTCTTTATTGGAGGGATCTCAAGATTTGTTAAAAGCTGGAACATCTGGAACTGCACAGAATGTTCCTAACACAAATTCTAATGGTCCTGAAACGTCCAGACCTGTTGATACTTCTACCAAGATGGATAATGGTGTAATCAGTCAGGACCCTCCAGAGCCTATGCCTAAAGGATTTATATCTTCAGGCAGAGATGGAGTAGGAAGTTCAAAATCTCCTTCATTACCACAGTCGTCAAATGTACTTCTGTCACGGGATTGTCTTCCACCCCATTCAGTCTCAGCTGAGACTATGGCTGGAAGAATTGGGTTAAGTAATATTGACCTGAATAGTGCATATGATGATGTACAGGATTATGTCGAGAACACAAGAAATTCTCGTCCTCCTTTGCCTTCAGGGAATGGGTCCCTTGATAATCCTTTATGGGTCCATTGTGACTCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCTACACAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTCAAACTATTTGGCAAGGCTCCAAATGATTTTCCCCATGCTCTCCGATCACAGATCCTTAACTGGTTATCCCACAGTCCCACCGAGATAGAGAGCTATATAAGGCCTGGCTGTATCATATTAACTGTATATCTCCGTCTAGAAAATTCTGCTTGGGAAGAGCTATGCTATAATCTAGGATCCAGCTTGAGAAAACTTGCTGTGCCGAATGATTCTTTTTGGAGATCAGGATGGATATATACAAGAGTGCAGCACTCGGTAGCTTTTCTGTATAATGGTCAGGTGGTCTTAGATGTACCATTGCGATTCAAAAGTCCACAGAATTGTCAGATTTTTTGTGTCAAACCACTTGCTGTTTCTTCAAGTTCTTGTGTTCAATTTATTGTGAAAGGATTCAACCTTTTGTTGTCTAACACCAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTACAAGATAGTTGTTATGATTTGGTTGATGCTGATGCTGCCATTGGACATAATGAGCTTCAGCATCTGAGCTTCTCTTGTCGTATACCGAATGTGACTGGAAGAGGGTTTATTGAGGTGGAAGATAATGGTCTTAGCAGCTGTTCGTTTCCATTCATAGTTGCAGAGCAAGAAATTTGTTCAGAGATATGTAACCTGGAGAATGTCATTGAGGCAGCTGAGACTGCTGATGACATCCAAATGAAAACTAAACTAATGGAAGAAAAGACTCAAGCATTGTATTTCGTACAAGAAATGGGTTGGCTCCTTCACAGAAACCGTGTGAAAGTTAGGCTGGGCCCTGTGGCACCTCTACAAGATTGCTTCCATTTTAATCGGTTCATGTGGCTTGTTGGCTTCTCTATGGACCATGACTGGTGTGCTGTGATGAAAAAGCTCTTGAACATTATCTTTGAGGGCACTGTTGATATAGGAGAGCATACCTCAGTTGAGTTAGCATTGTTAGAGATGGATCTTCTGCACAAAGCTGTAAAAAGAAATTGCAGGCCTATGGTGGAACTTTTGCTAAAATTTGTGCCAAGTAATGCTTCAGATGTTGGAGACAGTAAGGAGAAGCAAGTCAACAAGTCCCCTAACAGATTCATATTCAGACCTGATTCTGTTGGGCCTGCTGGGTTGACTCCCCTTCATGTTGCAGCAAGTATCCATGGTTTGGATAATGTATTGGATGCATTAACTGATGATCCAGCACTGGTGGGAATTGAGGCATGGAAAAGTGCTAAGGACACTACAGGTTTGACCCCTTATGACCATGCATCACTGAGGGGCTACTACTCCTACATTCAACTTGTCCAGAGGAAAATAAGCAACACATGCAAAAGTGAACATGTGCTTAATATCCCTGCCACTCTTGTAGATAGTAACATAAAGCAGAAACAATCAGATGGCCATAGGTCATCAAAAGTTTCAAGTTTGCAAACTGAGAAGATTGAAACAACAGCAATGCCCCGACATTGTGGGGTATGCCAGCACAAGCTGGCATACGGTGGTATGAGAAGTGCACTGGTTTATAGGCCAGCAATGCTGTCAATGGTTGCCATTGCAGCAGTGTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCCAAAGTCTATTATGTGTTCCAGCCATTCAGCTGGGAATCATTGGAATATGGATCCATGTAA 3063 0.4296 MEAQLEGKNQYLYGPVVPEMKSVGKRSLEWDLNDWKWDGDLFTATQLNSVPSDCRSRQLFPADPEILATGDASNSLSSAYDDVNLAEGRRELEKRRRGVADEGGVEMNDGAGSLNLNLGVQVYPIIEGEEKSGKKTKITGSTLNRAVCQVEDCRADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDASVVNDGSVNEEKGSSYLLMSLLRILSNMHSNGSDNMTSQDVLSHLLRNLASLAGTINGRNIVSLLEGSQDLLKAGTSGTAQNVPNTNSNGPETSRPVDTSTKMDNGVISQDPPEPMPKGFISSGRDGVGSSKSPSLPQSSNVLLSRDCLPPHSVSAETMAGRIGLSNIDLNSAYDDVQDYVENTRNSRPPLPSGNGSLDNPLWVHCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKAPNDFPHALRSQILNWLSHSPTEIESYIRPGCIILTVYLRLENSAWEELCYNLGSSLRKLAVPNDSFWRSGWIYTRVQHSVAFLYNGQVVLDVPLRFKSPQNCQIFCVKPLAVSSSSCVQFIVKGFNLLLSNTRLLCALEGKYLVQDSCYDLVDADAAIGHNELQHLSFSCRIPNVTGRGFIEVEDNGLSSCSFPFIVAEQEICSEICNLENVIEAAETADDIQMKTKLMEEKTQALYFVQEMGWLLHRNRVKVRLGPVAPLQDCFHFNRFMWLVGFSMDHDWCAVMKKLLNIIFEGTVDIGEHTSVELALLEMDLLHKAVKRNCRPMVELLLKFVPSNASDVGDSKEKQVNKSPNRFIFRPDSVGPAGLTPLHVAASIHGLDNVLDALTDDPALVGIEAWKSAKDTTGLTPYDHASLRGYYSYIQLVQRKISNTCKSEHVLNIPATLVDSNIKQKQSDGHRSSKVSSLQTEKIETTAMPRHCGVCQHKLAYGGMRSALVYRPAMLSMVAIAAVCVCVALLFKSSPKVYYVFQPFSWESLEYGSM 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00594 1020 ProSiteProfiles Zinc finger SBP-type profile. 145 222 IPR004333 GO:0003677
Viun9g00594 1020 SUPERFAMILY SBT domain 146 226 IPR036893 GO:0003677|GO:0005634
Viun9g00594 1020 MobiDBLite consensus disorder prediction 301 370 - -
Viun9g00594 1020 MobiDBLite consensus disorder prediction 301 333 - -
Viun9g00594 1020 MobiDBLite consensus disorder prediction 213 234 - -
Viun9g00594 1020 MobiDBLite consensus disorder prediction 435 463 - -
Viun9g00594 1020 Gene3D - 786 954 IPR036770 -
Viun9g00594 1020 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 95 902 IPR044817 GO:0003677
Viun9g00594 1020 Gene3D - 140 209 IPR036893 GO:0003677|GO:0005634
Viun9g00594 1020 FunFam Squamosa promoter-binding-like protein 14 139 209 - -
Viun9g00594 1020 SUPERFAMILY Ankyrin repeat 789 903 IPR036770 -
Viun9g00594 1020 Pfam SBP domain 148 221 IPR004333 GO:0003677
Viun9g00594 1020 MobiDBLite consensus disorder prediction 352 370 - -
Viun9g00594 1020 MobiDBLite consensus disorder prediction 428 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00594 Viun-Chr9 4366266 4375693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00594 1 1019 SBP-box Gene Family AT3G60030 47.876 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun9g00594 SBP 5.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00594 - - gmx:100776125 1763.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00594 9 4366266 4375693 Viun9g00594 9 4366266 4375693 ECH
Viun3g05577 3 61510899 61517086 Viun9g00594 9 4366266 4375693 PCT