Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00576 ATGGTGACTTTAACCCATGGGAGAAAGGAAGGGCAGGGAAAGAGACTTGGGAAATACGAATTGGGAAGAATTCTTGGAGAAGGAAATTTTGGAAAGGTCAAGTTGGCAAGGGACACTAATTCTGGGAAGCTTTTCGCTGTTAAGATTCTTGAGAAGAACAAAATCATTGACCTCAATAACACTGATCAGATAAAGAGGGAAATATCTACCTTGAAGCTTCTGAAGCACCCTAATGTCGTCAGATTATACGAGGTCTTGGCTAGCAAAACCAAAATTTACATGGTACTTGAGTACGTGAATGGAGGAGAGTTATTTGACAAAATTGCATCCAAAGGTAAACTTGAAGAAGCTGAAGGTAGAAAGATATTCCAACAGTTGATTGATGGTGTGAGTTTCTGCCACACCAAAGGTGTATTCCACAGGGATCTTAAGCTGGAGAATGTTCTTGTCGATGCCAAAGGGAACATAAAGATAACTGATTTTAATCTTAGTGCTTTGCCTCAGCATTTTAGGGATGATGGGTTGCTTCACACTACTTGTGGAAGTCCCAACTATGTTGCTCCTGAGATTCTTGCTAATAAAGGATATGATGGTGGAACATCAGATATATGGTCATGTGGTGTTATCTTGTATGTAATTCTTACAGGGTATCTTCCTTTCGATGACAGAAATCTTGCAGTTCTTTATCAAAAGATTTTTAAAGGAGACCTTCAGATACCAAGATGGTTATCGGCCGGTGCTCGAAACATGATAAAAAGAATGCTTGATCCAAATCCTAAAACCCGGATAACAATGGCTATGATCAAAGAAGATGAATGGTTCAAAGAAGGTTATATTCCTGCAAATCCAGAAGATGAAGAAGAGGGTGTGTTCATTGATGATGAAGCCTTTTCCATTCATAATACGTCACTTGAATCAGATCAGGGTAGTCCAACATCAACACTTGTCAATGCATTTCAATTGATAGGGATGTCTTCATGTCTAGATCTCTCTGGCCTTTTTGAGAATGAGGATGTTACTGAGAGGAAGATAAGGTTTACATCCACTCATTCACCAAAAGATTTGGAGGAGAGGATAGAAGACATTGTAACAGGGATGAGATGTAGGGTCCAGAAGAGGAATGGGATGATGAAAGTGACACAAGATACTAAAGCACAGAAATGTCTTTGTAGTCTTTCAGTGATAATAGAGATCTTCGAAATCAGTCCAACATTGTTTGTAGTAGAGTTGAGTAAGTGTTGTGGAGATGCTTCTGTGTATAGACAGTTATGCCAGAAATTGTCAAATGAATTGGGTTTTGAGCCAAACCAACAGCTAGAGAGCTCAGAAATGATAGGCCTACTAAGAGAAAATAATTTGGAAGCTATATAA 1371 0.3895 MVTLTHGRKEGQGKRLGKYELGRILGEGNFGKVKLARDTNSGKLFAVKILEKNKIIDLNNTDQIKREISTLKLLKHPNVVRLYEVLASKTKIYMVLEYVNGGELFDKIASKGKLEEAEGRKIFQQLIDGVSFCHTKGVFHRDLKLENVLVDAKGNIKITDFNLSALPQHFRDDGLLHTTCGSPNYVAPEILANKGYDGGTSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDLQIPRWLSAGARNMIKRMLDPNPKTRITMAMIKEDEWFKEGYIPANPEDEEEGVFIDDEAFSIHNTSLESDQGSPTSTLVNAFQLIGMSSCLDLSGLFENEDVTERKIRFTSTHSPKDLEERIEDIVTGMRCRVQKRNGMMKVTQDTKAQKCLCSLSVIIEIFEISPTLFVVELSKCCGDASVYRQLCQKLSNELGFEPNQQLESSEMIGLLRENNLEAI 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00576 456 Pfam Protein kinase domain 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00576 456 Pfam Haspin like kinase domain 88 167 - -
Viun9g00576 456 Gene3D Phosphorylase Kinase; domain 1 8 98 - -
Viun9g00576 456 Gene3D Kinase associated domain 1, KA1 311 432 - -
Viun9g00576 456 Gene3D Transferase(Phosphotransferase) domain 1 99 279 - -
Viun9g00576 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Viun9g00576 456 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165
Viun9g00576 456 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Viun9g00576 456 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 416 - -
Viun9g00576 456 FunFam Non-specific serine/threonine protein kinase 12 314 - -
Viun9g00576 456 FunFam Non-specific serine/threonine protein kinase 313 434 - -
Viun9g00576 456 SUPERFAMILY Protein kinase-like (PK-like) 15 317 IPR011009 -
Viun9g00576 456 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Viun9g00576 456 Pfam NAF domain 315 372 IPR004041 GO:0007165
Viun9g00576 456 ProSiteProfiles Protein kinase domain profile. 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00576 456 SMART serkin_6 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g00576 456 CDD CIPK_C 317 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00576 Viun-Chr9 4282802 4288069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00576 82 438 CBL-interacting serine-threonine protein kinases AT3G17510 67.598 2.37e-168 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Viun9g00576 Pkinase 3.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00576 K07198 - gmx:100815660 746.117