Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00560 ATGGAAGAAAAATCTTCGTTAAAAAATTTGCTGAAAGAAGAAGAAAGACCAGGGAACGGAACCGATCACAACACTATGGGATCCAGTGTTCTCTCCTTGAGCCTGAATAACTCTGGACAGCCCTTGAACCAAATGGGCATGCTGAGAATCAAACTTGAAGAAGCTAAGAAAGAGAATGAAATCTTGAAGGCGATGCTAACTCAGGTTAATGAACACTGCACTGTTCTTCAGAATCGAATACTTTTTGAGATGCAGCAACATCAACTCTCTTCATCAAATAAAAACAATAATCATCAGTCGCAGGGAAAAATACAAGGTTTGGAGAAACCAGTGCTACACACTCGGCAGTTTTTGAATATTGGTGATTGTTCTTCAGTTTCAGAGGGTTACACAGAAAACGTTGAAAAGAAAATATTCGGTGAAGGTGAAATGAACACAAAAATAGCATTGCATGAAGCAAAATGCATAGAAGATCAAGCATCTGAGGTTACTTGCAGAAGAGCTAAAGTATCCATAAGAGCACGATCAGATTTTTCTTTGATGGGAGATGGGTGTCAATGGAGAAAGTATGGACAAAAGACCGCCAAAGGCAATCCTTGTCCCAGAGCCTACTACCGTTGTAGCATGGGCACTGCATGTCCAGTTCGTAAACAGGTGCAGAGATGTTTCAAGGACGAGACTGTTCTGATCACTACCTACGAAGGGAGCCACAACCACCCACTCCCAGTAGCAGCCAGATCTTTCGCAAGCTCAACATCAGCAGCATTGAACATGTTCCTTTCTGGTTCACTCACAAGTTCAGGTGGCAGCACCACTCTACCAAACTCACCCCTCTTCTCTTCATCACTGTCTTCTATTTCCCCAACTGCAGTAGCCACCTTCTCCCACAGTGCAACATGTCCCACAGTAACACTGGATCTGACTCACCCCAACAACAACACCAATAACTATCTCCACTTCCAAAGGGCCACCACCACCACCACTTCACACCCTTTGTTCCCTCTCCCACTGCATGGCCACCCTCATGAAGGGTTGCCCTTATTGTGTTCCAAAGTCCCAACCTTTCTGGACAAAAACCTTGCATTGGTGGATGTTGTTAGTGAGGCCATAACCAAAGACCCTTCTCTGAAGGCAGCACTTTTTTCAGCCATTTCCTCACTCACTGCAGATCCTCAGAAGAACAGCAATAACCTCAGCCAACACAGTAAAAGTAGCAGTGGTTATGACCCTTGTTCTAAGATGCCTGCAATACCACCTCACCAGCCTTACACTACTGAGTTGATATAG 1287 0.4452 MEEKSSLKNLLKEEERPGNGTDHNTMGSSVLSLSLNNSGQPLNQMGMLRIKLEEAKKENEILKAMLTQVNEHCTVLQNRILFEMQQHQLSSSNKNNNHQSQGKIQGLEKPVLHTRQFLNIGDCSSVSEGYTENVEKKIFGEGEMNTKIALHEAKCIEDQASEVTCRRAKVSIRARSDFSLMGDGCQWRKYGQKTAKGNPCPRAYYRCSMGTACPVRKQVQRCFKDETVLITTYEGSHNHPLPVAARSFASSTSAALNMFLSGSLTSSGGSTTLPNSPLFSSSLSSISPTAVATFSHSATCPTVTLDLTHPNNNTNNYLHFQRATTTTTSHPLFPLPLHGHPHEGLPLLCSKVPTFLDKNLALVDVVSEAITKDPSLKAALFSAISSLTADPQKNSNNLSQHSKSSSGYDPCSKMPAIPPHQPYTTELI 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00560 428 MobiDBLite consensus disorder prediction 1 37 - -
Viun9g00560 428 SMART WRKY_cls 181 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun9g00560 428 MobiDBLite consensus disorder prediction 391 428 - -
Viun9g00560 428 SUPERFAMILY WRKY DNA-binding domain 174 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun9g00560 428 MobiDBLite consensus disorder prediction 1 20 - -
Viun9g00560 428 MobiDBLite consensus disorder prediction 21 37 - -
Viun9g00560 428 Pfam WRKY DNA -binding domain 183 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun9g00560 428 ProSiteProfiles WRKY domain profile. 176 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun9g00560 428 MobiDBLite consensus disorder prediction 391 409 - -
Viun9g00560 428 Coils Coil 45 72 - -
Viun9g00560 428 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 42 397 IPR044810 GO:0003700
Viun9g00560 428 Gene3D WRKY domain 166 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00560 Viun-Chr9 4207272 4212499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00560 48 308 WRKY Transcription Factor Family AT4G04450 40.909 6.37e-63 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun9g00560 WRKY 1.2e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00560 - - gmx:100781603 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00560 9 4207272 4212499 Viun3g05539 3 61241677 61245546 PCT