Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00547 ATGCAACTCCCTGAGCGTGTTCCAACACAGCACAACACAATGAAGCTTTCTTCACCCAAACACTTATCTCCAACACTCTTCTTCTTCTTCTTCCTCTTATTTTTGCCGACTGTGATCGGTGCCTCAGATGGCAGCAGTGTGGGATTCGAGTATCTGAACGTTTCGCCTTCTGAATTCGCGGGGACAGTGAAAACTGTGGTTGATGTGTTGCAGGATGTGACCTCCATCCTCTCTGAGTTCGGTTCTGGCTTCGGAGACTCGCTTCTTTCTAACGCCGTCTCTGATTGTCTAGATTTGCTTGACCTCTCCTCTGATGAACTTGATTGGTCTGTCTCTGCTACGCAGAATCCCCAAGGGAAGCATAACAGCACAGGAAACCAAAGTTCAGATTTGAGGACATGGCTAAGTGCTGCACTTGCGAACCAAGACACATGCATGGACGGATTCGACGGCACCGACGGCATTGTGAAGGGTTTAGTTTCCACAGGGCTTGGCCAAGTCATGTCGTTGCTGCAAGAACTTCTTACGCAGGTGAACCCCATTTCGAACCAATCCCCTTTCTCTTCCACAGAGGGGCAGTTTCCGTCGTGGGTTAAACCGGGGGACAGGAAGCTGCTCCAGACAAATGGGGTGGTCGCGGATGCGGTGGTTTCCGCCGATGGCACCGGGGACTTCACCAAAATCATGGATGCAGTCTTGGCTGCGCCTAATTACAGCATGAAACGCTACGTGATATTCCTGAAGAGAGGGGTTTACCATGAGAACGTTGAGATCAAGAAGAAGAAGTGGAATCTCATGATGATCGGAGAAGGCATGAATGTTACTGTTATCACCGGTAACAGGAGCTTCGTCGACGGTTGGACCACCTTCCGGTCAGCAACTTTTGCTGTGAGTGGCAGAGGATTCATAGCACGAGACATCACCTTCCAGAACACAGCAGGAGCAGTGAAGCACCAAGCTGTGGCACTCAGATCAGACTCTGACCTCTCTGTATTCTACCGATGTGGGATTTCCGGTTACCAAGACAGCCTCTATACCCACACCATGCGCCAATTCTACAGAGAATGCACAATCACTGGCACTGTGGATTTCATATTTGGTGATGCCACTGCCATTTTCCAAAACTGCCTCATAGAGGTCAAACAAGGGTTACCGAATCAAAAGAACACCATCACAGCACAAGGAAGGAAAACCCCTGATGAACCAACTGGTTTCTCGATCCAGTTCTGCAACATTTCTGCTGATTCTGACCTTCTGAACTCGGTTAACTCCACCCGCACATACCTCGGCAGACCCTGGAAACGATATTCCAGAACAGTTTTCATGCAATCTTACATCAGTGATGTGTTGAGTCCCGAAGGGTGGTTGGCGTGGGATGGTGACTTTGCCTTGGACACATTGTACTATGCAGAGTACTTGAATTATGGAGCTGGTGCTGGAGTTGGTAACCGAGTGAAATGGCCAGGGTACCATGTGATGAATGATTCTAGCCAGGCTAGTAATTTCACAGTGTCGCAATTTATTGAGGGGAATCTTTGGTTACCTTCAACTGGTGTAGCCTTCACAGCTGGATTGGAAGAATGA 1584 0.4893 MQLPERVPTQHNTMKLSSPKHLSPTLFFFFFLLFLPTVIGASDGSSVGFEYLNVSPSEFAGTVKTVVDVLQDVTSILSEFGSGFGDSLLSNAVSDCLDLLDLSSDELDWSVSATQNPQGKHNSTGNQSSDLRTWLSAALANQDTCMDGFDGTDGIVKGLVSTGLGQVMSLLQELLTQVNPISNQSPFSSTEGQFPSWVKPGDRKLLQTNGVVADAVVSADGTGDFTKIMDAVLAAPNYSMKRYVIFLKRGVYHENVEIKKKKWNLMMIGEGMNVTVITGNRSFVDGWTTFRSATFAVSGRGFIARDITFQNTAGAVKHQAVALRSDSDLSVFYRCGISGYQDSLYTHTMRQFYRECTITGTVDFIFGDATAIFQNCLIEVKQGLPNQKNTITAQGRKTPDEPTGFSIQFCNISADSDLLNSVNSTRTYLGRPWKRYSRTVFMQSYISDVLSPEGWLAWDGDFALDTLYYAEYLNYGAGAGVGNRVKWPGYHVMNDSSQASNFTVSQFIEGNLWLPSTGVAFTAGLEE 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00547 527 SUPERFAMILY Pectin lyase-like 213 524 IPR011050 -
Viun9g00547 527 Pfam Pectinesterase 214 511 IPR000070 GO:0030599|GO:0042545
Viun9g00547 527 PANTHER PECTINESTERASE 67 515 - -
Viun9g00547 527 FunFam Pectinesterase 208 525 - -
Viun9g00547 527 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 63 171 IPR035513 -
Viun9g00547 527 Pfam Plant invertase/pectin methylesterase inhibitor 87 163 IPR006501 GO:0004857
Viun9g00547 527 FunFam Pectinesterase 38 180 - -
Viun9g00547 527 ProSitePatterns Pectinesterase signature 2. 358 367 IPR033131 -
Viun9g00547 527 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 182 IPR035513 -
Viun9g00547 527 CDD PMEI-like_4 41 182 - -
Viun9g00547 527 Gene3D - 211 527 IPR012334 -
Viun9g00547 527 SMART PMEI_2 41 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00547 Viun-Chr9 4056667 4060072 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00547 27 525 Carbohydrate Esterase AT3G43270 64.854 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00547 K01051 - gmx:100801813 840.491