Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00546 ATGCAATTCATTGCAATGGCTGTATTCTGGAGAAAACAACTTGCTCCAGTTCCATCTGCCACATTCATCTTCATCTTCTTCTTCTTTGCTCCCTGTGATTTTGCGATACTCCATCCCCTCAAAGTTTCTCCTTCCGAATTCGTAAGCTCCGTGAGAAAAGTAGGTGATGTTTTGCAAAACGTTACCTCCACTCTCAAATCTGAGTTCAGCAATGTCAAGAGTGAGTTTCCTCTTTCTGATGCCATTGTCGCATGTCTTGAGTTGCTGGACTTGTCAGCTGATGAACTCAGCTGGTCCATTTCCGCAGTTGAAACTCCCCAAGGGAAGCATAACAGTACTGGGAATCTGAGCTCTGATTTGAGGACATGGCTAAGTGGTGTACTTGCGAACACAGACACGTGCATGGAAGGTTTTGAAGGTACAAGTGGGAATGTGGAGGATCTAATATACGATGAAATTAAGGAAGCAATGTTGTTGCTCCAAAACCTGGTGAACCAGGTTGTTTCGGATTCTTTCAGAATGGACAAAGTTCCTGCATTGGTTGAACCACTGCTGCAGAGAAATACGATGCCTGCGGATGCTGTAGTTGCTGCTGATGGAAGTGGTAATTTTACTACGGTGATGGATGCTGTGAATGCAGCTCCTGAATATAGCATGAGACGCTTTGTGATACACATAAAGAAGGGCTTGTACACCGAGAAAGTTGAGATCAAGAAGAACAAATGGAACATTGTGATGATCGGAGAGGGCATGGATGATACTGTTATCTCCGGTAACCTCAGCCGTACTCAAAATTTAACCACATACAGAACTGCTACCTTTGCTGTAAATGGGAGAGGATTCATAGCAACAGACATTTCCTTCAGGAACACTGCAGGACCCGAAAGAAACCAATCTGTTGCACTGAGATCAGACTCTGACCTTTCTGTGTTTCTCCGATGTGGGATCTTTGGGTACCAAGACAGCCTCTATGCCCACTCCTTGCGCCAATTTTACAGAGAATGCAAAATTAGTGGCACCGTGGATTTCATATTTGGACATGCGAGTGCAGTGTTCCAGAACTGCACAATACTGGTGAAGAAAGGGTTAGATAAACAGCAGAACACAATCACAGCTCAAGGAGAAACGTGCCCTTATGGATCATCTGGGTTCTCCATCCAATTCTGCAACGTTTCAGCAGACCATGATCTTCTGCCCTCAGTTAACACCACCTCAACTTACCTTGGAAGACCGTGGAGGAAATATTCTACAACAGTTTTCATGCAGTCTTACATTAGTGAGGTGTTAAGGCCAGAAGGGTGGCTAGAGTGGGATGGAACATCATTGTATTTGGACACTTTGTACTTCGGAGAGTACAAGAATTATGGACCAGGAGCTAGGGTTGATAACAGAGTGAAATGGCCAGGGTACCATGTCATCAATGATTCTAGCCAGGCTTATAACTTCACTGTGGCCAATCTCCTTTTGGGGGATCTTTGGTTACCTTCAACTGGTGTAACATACACTTCTGGATTTGGTGGCCACTGA 1527 0.4466 MQFIAMAVFWRKQLAPVPSATFIFIFFFFAPCDFAILHPLKVSPSEFVSSVRKVGDVLQNVTSTLKSEFSNVKSEFPLSDAIVACLELLDLSADELSWSISAVETPQGKHNSTGNLSSDLRTWLSGVLANTDTCMEGFEGTSGNVEDLIYDEIKEAMLLLQNLVNQVVSDSFRMDKVPALVEPLLQRNTMPADAVVAADGSGNFTTVMDAVNAAPEYSMRRFVIHIKKGLYTEKVEIKKNKWNIVMIGEGMDDTVISGNLSRTQNLTTYRTATFAVNGRGFIATDISFRNTAGPERNQSVALRSDSDLSVFLRCGIFGYQDSLYAHSLRQFYRECKISGTVDFIFGHASAVFQNCTILVKKGLDKQQNTITAQGETCPYGSSGFSIQFCNVSADHDLLPSVNTTSTYLGRPWRKYSTTVFMQSYISEVLRPEGWLEWDGTSLYLDTLYFGEYKNYGPGARVDNRVKWPGYHVINDSSQAYNFTVANLLLGDLWLPSTGVTYTSGFGGH 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00546 508 Pfam Plant invertase/pectin methylesterase inhibitor 59 147 IPR006501 GO:0004857
Viun9g00546 508 Pfam Pectinesterase 193 490 IPR000070 GO:0030599|GO:0042545
Viun9g00546 508 SUPERFAMILY Pectin lyase-like 190 504 IPR011050 -
Viun9g00546 508 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 162 IPR035513 -
Viun9g00546 508 SMART PMEI_2 18 159 IPR006501 GO:0004857
Viun9g00546 508 FunFam Pectinesterase 187 505 - -
Viun9g00546 508 ProSitePatterns Pectinesterase signature 2. 337 346 IPR033131 -
Viun9g00546 508 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 168 IPR035513 -
Viun9g00546 508 PANTHER PECTINESTERASE 50 495 - -
Viun9g00546 508 CDD PMEI-like_4 32 171 - -
Viun9g00546 508 Gene3D - 191 506 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00546 Viun-Chr9 4044318 4046232 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00546 29 505 Carbohydrate Esterase AT3G43270 53.507 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00546 K01051 - gmx:100798620 713.761