Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00545 ATGGCTCATTCATCTCGTAAACTCGTCTTTCTTCTGCTTGCAATCTTCTACTCACACACTTGTTCTGCCACCTCCTCCAATGCTTCCGCAACACTTCACTCCAATCTCTCTTCCTTAAGATCTTTCTGCACAACCACTCCATATCCAGAAGTTTGTTTCGATTCATTGAAGCTATCCATCTCAATAAACATAAGTCCAAACATTATCAGCTACCTCCTTCAGTCCCTCCAAGTAGCAATATCTGAAGCCACAAAGCTCTCCAACATCTTCCACAACGTTGGACACTCAAACATCATAGAGAAGCAAAGAGGAGCGGTTCAGGACTGCAGAGAACTCCACCAATCCACATTGGCTTCTCTGAAAAGATCACTCTCAGGGATCCGTTCCTCCAACTCCATGAGCATAGTTGATGCAAGAGCCTACCTCAGTGCAGCTCTCACCAACAAGAACACATGCTTGGAAGGCCTAGATTCTGCTTCTGGCACCATGAAACCAGCTCTGGTGAAATCCGTGATCAACACTTACAAGCATGTCAGTAACTCTCTTTCTGTGCTACCGAAGCCTGAGACGGGGACTCCCACAGGCCAGAAGAATAAACAACCATTGATGAATGCTCCGAAGTGGTTATCAAGCCGAAAGCAAGGAACTTTTCAAGATAGGGAAGAATATAACCCAAATGAAGTGCTAGTCGTGGCTGCAGATGGAACTGGGAACTTTAGCACCATCACTGAAGCCATCAACTTTGCTCCGAACAACAGCATGGATAGGACAGTGATCTATGTCAAAGAAGGGATTTACGAGGAAAACGTTGAAATCCCAAGCTATAAGACCAACATTGTGATGCTCGGCGATGGAAGTGATGTCACTGTCATAACTGGTAACAGAAGCGTTGGTGATGGCTGGACCACTTTCAGATCTGCAACTCTAGCGGTTTCCGGTGATGGTTTTCTTGCACGTGACATTGCAATTGAGAACAGTGCAGGGCCTGAGAAGCACCAAGCAGTGGCCTTGAGGGTAAATGCAGACTTAACTGCATTTTACCGGTGTGCCATTTATGGCTACCAAGACACTTTATATGTTCACTCCTTTAGACAATTTTACAGAGAGTGCGACATTTATGGGACCATAGATTTCATATTTGGAAATGCAGCAGTGATTTTTCAAGACTGTAACATCATATCAAGAAAGCCATTGCCTGGGCAATTCACTGTGATCACTGCACAATCCAGAGATAGCCCAGATGAGGACACTGGCATCTCAATCCAGAACTGTTCAATCATAGCTACCCTTGATCTGTATTCCAACTCTAGCAGTTTCAAGAGCTTCCTTGGGAGGCCATGGAGGGTCTATTCTCGCACTGTTTACCTCGAGTCTTACATTGATAACTTCATTGATCCAAAGGGTTGGACAAAGTGGTCTGGTGAACAACCTTTGGACACATTGTACTATGGAGAATATGACAACTATGGACCTGGTTCCACCATAGATAATCGTGTGCAATGGTTGGGCTTCCATTTGATGGATTATGGTGATGCATATAATTTCACAGTTTCGCAGTTCATCAATGGAGATGGTTGGCTTGATACTACTTTGGTACCTTATGATAACGGGATTTGA 1617 0.4447 MAHSSRKLVFLLLAIFYSHTCSATSSNASATLHSNLSSLRSFCTTTPYPEVCFDSLKLSISINISPNIISYLLQSLQVAISEATKLSNIFHNVGHSNIIEKQRGAVQDCRELHQSTLASLKRSLSGIRSSNSMSIVDARAYLSAALTNKNTCLEGLDSASGTMKPALVKSVINTYKHVSNSLSVLPKPETGTPTGQKNKQPLMNAPKWLSSRKQGTFQDREEYNPNEVLVVAADGTGNFSTITEAINFAPNNSMDRTVIYVKEGIYEENVEIPSYKTNIVMLGDGSDVTVITGNRSVGDGWTTFRSATLAVSGDGFLARDIAIENSAGPEKHQAVALRVNADLTAFYRCAIYGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVIFQDCNIISRKPLPGQFTVITAQSRDSPDEDTGISIQNCSIIATLDLYSNSSSFKSFLGRPWRVYSRTVYLESYIDNFIDPKGWTKWSGEQPLDTLYYGEYDNYGPGSTIDNRVQWLGFHLMDYGDAYNFTVSQFINGDGWLDTTLVPYDNGI 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00545 538 Pfam Plant invertase/pectin methylesterase inhibitor 38 183 IPR006501 GO:0004857
Viun9g00545 538 SMART PMEI_2 34 184 IPR006501 GO:0004857
Viun9g00545 538 FunFam Pectinesterase 222 538 - -
Viun9g00545 538 NCBIfam pectinesterase inhibitor domain 9 184 IPR006501 GO:0004857
Viun9g00545 538 SUPERFAMILY Pectin lyase-like 226 536 IPR011050 -
Viun9g00545 538 Pfam Pectinesterase 229 524 IPR000070 GO:0030599|GO:0042545
Viun9g00545 538 PANTHER PECTINESTERASE 16 528 - -
Viun9g00545 538 FunFam Pectinesterase 35 187 - -
Viun9g00545 538 ProSitePatterns Pectinesterase signature 2. 372 381 IPR033131 -
Viun9g00545 538 CDD PMEI-like_3 41 184 - -
Viun9g00545 538 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 185 IPR035513 -
Viun9g00545 538 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 187 IPR035513 -
Viun9g00545 538 MobiDBLite consensus disorder prediction 183 202 - -
Viun9g00545 538 Gene3D - 223 538 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00545 Viun-Chr9 4023624 4025880 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00545 20 538 Carbohydrate Esterase AT2G26440 65.414 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00545 - - gmx:100776969 938.332