Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00544 ATGGCTGATTCATCTCATAAACTATTTTCCCTTCTATGTCTACTCTTCTTCTCAACTACTTGTGTCCACTCTTCCGATGCTTCCGTAGGAGTTGAAGTTGACCTCTCTTTCCTAAGATATTTGTGCGCAACCACCCCATACCCAAACCTTTGCTTAAGTTCACTCAACATCTCAATAGACCCATCTCCGTCTGCATCTCCATCTCCATCTCCATCTCCAAATCCAAACATAAACGACTACCTCATTCACTCCCTCCAAAAAGCAGTATCTGAAACCACAAACCTCATAAATCTCTTCAACAATGTCGGAAAACCAAACATCATAGACAAGCAAAGAGGAGGAGGTGGACTTCGAGACTGTCGGGAACTCCATCAATCCTCATTGGCTTCTTTGGAAGAATCCATATCAGGCATCCGTTCCTCCGACATGGACACAACTGACGTAGCAATCTACCTCAGTGCAGTCCTCACCAACAAGAACACATGTTTAGAAGGCCTGGATTCTGCTACTGGCACCATGAAGCCCGTTCTGGTGAAGGCTGTGATCAACACTTACAAGCATGCAAGTAACTCTCTGGCAATCCTCTCTAACCCAGCGATGGGGACTGATCCTGAAAACAACCCTTTGAAGGGTGATCCAGAGTGGCTAACAAGCACTGACCAAAGCTTCTTCGATGACTCGCATGGTGATGAGTATGACCCAAAAGAAAAACTTGTTGTGGCTGTAGATGGAACCGGGGATTTTCGAACCATCACTGAAGCCATCAACTCTGCTCCAATTAACAGCATGGAGAGAATAGTGATCTATGTCAAAGAAGGGATTTATGAGGAAAACGTGGAAATCCCATGCAATAGGACCAACATTGTGATGATTGGCGATGGAAGTGATGTCACTGTCATAACTGGTAACAGAAGCGTTGGTGATGGCTGGACCACTTTCAGATCTGCAACTCTAGCGGTTAATGGTAAAGGATTTCTGGCACGTGATATAGCGTTCAAGAACAGCGCAGGGCCAAAGTCACAAGCAGTTGCCTTGAGGGTAAGTGCAGAACTTGCTGCCTTTTACAGGTGTGCAATGGATGGTTACCAAGACACTTTATATGTTCACTCCTGGAGACAATTTTACAAAGAGTGTGACATTTCTGGGACCATAGATTTCATATTTGGGAATGCAGCAGTGGTTCTACAAGAATGTAACATTATATCGAAAGAACCATTGCATGGCCAAGCCACTGTCATCACTGCACAGTCCAGAGATGACCCAAATGAGCCCAGTGGCATCGTAATCCAATCATGCAACATCAATGCTAGCTTTGATAGCAGTAGTGTTAAGAGCTACCTTGGTAGGCCATGGAGGAACTATTCTCGCACCGTTTACCTCGAGTCCTTCATTGATGGCTTCATTGACCCAAAGGGTTGGACAGAGTGGAATGATGATAAGAAAAGATTGGACACCTTGTATTACGGAGAGTTTGAGAATTATGGACCTGGTTCCAGCACAGACAATCGTGTAAAATGGTCTGGGTACCATGTAATGACCGATGAGGACGCCAACAATTTCACAGTTTCAAAGTTCATCAATGACGATGATTGGCTTCAGGTTACTCATTTTCCTTTTGATTTAGGAATCTGA 1632 0.4449 MADSSHKLFSLLCLLFFSTTCVHSSDASVGVEVDLSFLRYLCATTPYPNLCLSSLNISIDPSPSASPSPSPSPNPNINDYLIHSLQKAVSETTNLINLFNNVGKPNIIDKQRGGGGLRDCRELHQSSLASLEESISGIRSSDMDTTDVAIYLSAVLTNKNTCLEGLDSATGTMKPVLVKAVINTYKHASNSLAILSNPAMGTDPENNPLKGDPEWLTSTDQSFFDDSHGDEYDPKEKLVVAVDGTGDFRTITEAINSAPINSMERIVIYVKEGIYEENVEIPCNRTNIVMIGDGSDVTVITGNRSVGDGWTTFRSATLAVNGKGFLARDIAFKNSAGPKSQAVALRVSAELAAFYRCAMDGYQDTLYVHSWRQFYKECDISGTIDFIFGNAAVVLQECNIISKEPLHGQATVITAQSRDDPNEPSGIVIQSCNINASFDSSSVKSYLGRPWRNYSRTVYLESFIDGFIDPKGWTEWNDDKKRLDTLYYGEFENYGPGSSTDNRVKWSGYHVMTDEDANNFTVSKFINDDDWLQVTHFPFDLGI 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00544 543 Pfam Pectinesterase 238 528 IPR000070 GO:0030599|GO:0042545
Viun9g00544 543 SUPERFAMILY Pectin lyase-like 237 542 IPR011050 -
Viun9g00544 543 Pfam Plant invertase/pectin methylesterase inhibitor 37 194 IPR006501 GO:0004857
Viun9g00544 543 SMART PMEI_2 33 194 IPR006501 GO:0004857
Viun9g00544 543 NCBIfam pectinesterase inhibitor domain 7 197 IPR006501 GO:0004857
Viun9g00544 543 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 196 IPR035513 -
Viun9g00544 543 FunFam Pectinesterase 231 543 - -
Viun9g00544 543 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 197 IPR035513 -
Viun9g00544 543 CDD PMEI-like_3 41 199 - -
Viun9g00544 543 ProSitePatterns Pectinesterase signature 2. 380 389 IPR033131 -
Viun9g00544 543 PANTHER PECTINESTERASE 22 533 - -
Viun9g00544 543 Gene3D - 232 543 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00544 Viun-Chr9 4011058 4012939 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00544 41 543 Carbohydrate Esterase AT2G26440 56.430 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00544 - - gmx:102665651 690.263