Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00543 ATGGCCTTCCAGGATTTCGAGCTCATCTCGGAGCGCCGAAGAAACGAGAACAAACTCAGGCTCAGGAAGAAGATCCTCATCAGCGTCGTCTCCGCCGTTCTTCTTGCATGCGTGGTTGCCGCCGCCACATTCGTGGTGGTCCAGAGAACCGGTGGTTCGTCCACGAAAACTGGAACCCCAATAGAAGAAGCCTCCGAGAGGCCACACGTGGACCAAAACTCGAGGCTGGTGGAAATGATCTGCAGCTCCGCGGAGTACAAAGAGAAATGCCAGAAAACCCTCGGCGAGGCTCTGGAGAAGGACCCCAAGCTCACGGAGCCCAAGGACCTGCTCATGGTGTCCTTTATAATTGCCGAGAACGAGGTGAACAAAGCCTTCAACCAAACCACGAGAATGGACATCGCGTCGGAAGATGAGAAAGGCGCGTACAGTGACTGCAAGGAGATGTTCGATGACGCCAAGGAAGAGCTGAAACGTGCGATCGACGAGGTCGGAGAAAACGATGCCAAAGTACTCTCCACGAAAGCTGCGGAAATCAACAACTGGCTCAGCGCGGTTATGGGCTACCAGCAAACCTGCATCGACGGGATTCCCGAAGGGAAGATGAAGCAAGACTTCGACAAGCTGTTCAAGGAGTCAAGGGAGCTTGTGAGCAATTGCCTTGCCGTTATGGCGCAGTTTGCTTCGTTCTTTTCGATCTTCGAAGGAGCTGGGAACATTCACCTTCCATGGGAAACCGACAATAATGATGCACCTGCCCCTGCTTCTGGTTCTTCTGCTTCTGCTCCCGGTGTTGCCCCTGCAGGTTCTGCTCTTGCTCCTGGTTCCGCTCCTCGTCCGGCTCCGGTCCCAGTTCCTTCCATTGATGATCCACTTCCAACTCTGCCTATTCCTACTTGGGCTGGCCCTTCTGAGTTCAAAGGATCAAATGAGAAACCCACACCCAATGTCACCGTCGCACAAGATGGCAGCGGAGACTTCAAAACCATCTCCGAAGCCTTGGCTGCCATCCAGACACCATACGAGGGAAGGTACGTGGTTTACGTTAAAGCTGGAATTTACGATGAGACCGTGACAGTGACAAAGAAATTGACAAACCTAACCATGTACGGTGACGGAGGTGACAAGAGCATCATCACTGGCAACAAAAATTTCGTTGATGGAGTCAGAACTTTCCAAACTGCATCATTCGTGGTACTGGGAGATGGATTCTTGGGCAAAGAGATGCAATTCAGAAACACTGCCGGAGCAGAGAAGCATCAAGCGGTGGCTGCAAGAGTGCAAGCCGATCAAGCAATGTTTTTCAACTGTGTCTTTGACGGTTACCAAGACACTCTCTACGCCCAAACCCACAGACAGTTCTACCGCGACTGCACGATCACCGGCACCATCGACTTCATCTTCGGGGACGCATCGGCGGTGTTTCAAAACTGCACGATGATGGTGAAGAAGCCCCTTCAGAACCAGCAGAACATTGTGACTGCACAAGGGAGACTGGACAAGCAAGAGAACACAGGGTTCGTTCTGCAGAAGTGTGTGATCAAAGCTGCTGATGACTTGGTCCCGTTGAAGGGAACGGTGAGGAACTACCTCGGAAGGCCATGGAAGGAGTACTCAAGAACCATCATCATGGAGACTCAAATCGATGACTTGATTCACCCAGATGGGTGGCTTCCATGGGAAGGGGACTTTGCACTCAAAACGCTGTACTATGGTGAGTTCAACAACAATGGAGGAGGTGCCAGCACCAGCGCTAGGGTGAATTGGCCTAACCGCAAAGACATTGATAGGGATGAGGCAACCAGGTACACGGTTGAGGCTTTCTTGCAAGGGACATGGATCAATGGCACAGGAGTCCCAGCTCAACTGGGCTTGTATTCTTAA 1884 0.5202 MAFQDFELISERRRNENKLRLRKKILISVVSAVLLACVVAAATFVVVQRTGGSSTKTGTPIEEASERPHVDQNSRLVEMICSSAEYKEKCQKTLGEALEKDPKLTEPKDLLMVSFIIAENEVNKAFNQTTRMDIASEDEKGAYSDCKEMFDDAKEELKRAIDEVGENDAKVLSTKAAEINNWLSAVMGYQQTCIDGIPEGKMKQDFDKLFKESRELVSNCLAVMAQFASFFSIFEGAGNIHLPWETDNNDAPAPASGSSASAPGVAPAGSALAPGSAPRPAPVPVPSIDDPLPTLPIPTWAGPSEFKGSNEKPTPNVTVAQDGSGDFKTISEALAAIQTPYEGRYVVYVKAGIYDETVTVTKKLTNLTMYGDGGDKSIITGNKNFVDGVRTFQTASFVVLGDGFLGKEMQFRNTAGAEKHQAVAARVQADQAMFFNCVFDGYQDTLYAQTHRQFYRDCTITGTIDFIFGDASAVFQNCTMMVKKPLQNQQNIVTAQGRLDKQENTGFVLQKCVIKAADDLVPLKGTVRNYLGRPWKEYSRTIIMETQIDDLIHPDGWLPWEGDFALKTLYYGEFNNNGGGASTSARVNWPNRKDIDRDEATRYTVEAFLQGTWINGTGVPAQLGLYS 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00543 627 NCBIfam pectinesterase inhibitor domain 70 226 IPR006501 GO:0004857
Viun9g00543 627 SUPERFAMILY Pectin lyase-like 313 620 IPR011050 -
Viun9g00543 627 MobiDBLite consensus disorder prediction 277 298 - -
Viun9g00543 627 Pfam Pectinesterase 316 611 IPR000070 GO:0030599|GO:0042545
Viun9g00543 627 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 227 IPR035513 -
Viun9g00543 627 MobiDBLite consensus disorder prediction 245 323 - -
Viun9g00543 627 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 227 IPR035513 -
Viun9g00543 627 MobiDBLite consensus disorder prediction 309 323 - -
Viun9g00543 627 Coils Coil 143 163 - -
Viun9g00543 627 CDD PMEI-like_3 80 229 - -
Viun9g00543 627 Pfam Plant invertase/pectin methylesterase inhibitor 76 222 IPR006501 GO:0004857
Viun9g00543 627 FunFam Pectinesterase 73 228 - -
Viun9g00543 627 ProSitePatterns Pectinesterase signature 2. 460 469 IPR033131 -
Viun9g00543 627 Gene3D - 310 625 IPR012334 -
Viun9g00543 627 FunFam Pectinesterase 310 625 - -
Viun9g00543 627 SMART PMEI_2 72 223 IPR006501 GO:0004857
Viun9g00543 627 PANTHER PECTINESTERASE 34 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00543 Viun-Chr9 4004974 4007202 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00543 1 626 Carbohydrate Esterase AT2G26450 40.301 5.76e-172 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00543 - - gmx:100807628 882.093