Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00542 ATGTCATTGAAAAGGTTAGATCAATCCCTGAGAGCACTGAAATCCCCTACAAGAAACAACGATGACATTCAAACATGGTTAAGTGCTTCCATAACTTTCCAACAATCTTGTAAAGACTATGCAGATGCACAGAACAAAACATCCTCTGCAGATGGTCGTATGCAAAGAATGTCCGAAAAAATGGAGTATCTGTCTCAACTGGGAAGCAATTCATTAGCACTTGTTAACCATGTGAGCGAAAAAGGTATCCTCAAAGGGAACACCAACAAAGAGGGACATGAATTTCCGAAGTGGGTATCAGCCAAAGGACGTAAACTGCTTCAAGATGGCACCATAAAAGCAAATGCCGTAGTTGCAAAAGATGGTTCAGGAGATTACAAGACAGTTTCTGAAGCCATTAAGGCTGCTTCAGGGAAAAGGTTTGTGATTTATGTTAAGGAAGGGATTTATAAGGAGAAGATTAAAACCAGCAAAGATGGTATCACGTTAATTGGAGATGGAAAATACTCTACTCTTATTGTTGGAGATGACAGCGTTGGCGAGGGTTCTTCCTTAACTGGTTCAGCCACGTTTACAATCACCGGCGATGGCTTTATCGCACGTGACATCGGATTCCAGAACAACGCCGGCCCACAAGGCGAACAAGCGGTGGCTCTGAACATTGCCTCCGACCATTCCGTGCTCTACCGGTGCAGCGTATCAGGGTACCAAGACACCCTCTACGCCCTCGCCCTGCGCCAGTTCTACGCAGAATGCGACATTTACGGCACAATAGACTTCATCTTCGGCAACGCCGCCGCTGTCTTCCAGCGGTGCAACCTCCTCCTCCGGCGCCCTCGCAGCTCCGGCTACGACGCCATTCTGGCCAACGGGCGAACTGACCCTGGCCAGAACACCGGGTTCTCCGTTCACAAGTGCATCATATCGCCGACCTCAGACTTTAAGCAGTCGCGCAATGCGTTTCTGGGGAGACCCTGGAAGGAGTATTCGAGATCGGTGGTGATGCAGAGTAGAATCGACAGTGTGATTGCGGCGAAAGGGTGGGTGGCGTGGCCTGGATATGGAAGCTCCGTGTTGAAGACTTTGTATTTCGCGGAGTATGGTAATGAAGGACCTGGTGCTGGAACCTCGGGGAGGGTGGAGTGGAAGGGTTTTCATGTTCTTAAGTCGCAAGATGCCACCAAATTCACTGTTGCTAGTTTTATTTCTGGAAACTCGTGGATTCCCTCTGGAGTTAATTTCATTTCAGGGCTTAATTAA 1260 0.4833 MSLKRLDQSLRALKSPTRNNDDIQTWLSASITFQQSCKDYADAQNKTSSADGRMQRMSEKMEYLSQLGSNSLALVNHVSEKGILKGNTNKEGHEFPKWVSAKGRKLLQDGTIKANAVVAKDGSGDYKTVSEAIKAASGKRFVIYVKEGIYKEKIKTSKDGITLIGDGKYSTLIVGDDSVGEGSSLTGSATFTITGDGFIARDIGFQNNAGPQGEQAVALNIASDHSVLYRCSVSGYQDTLYALALRQFYAECDIYGTIDFIFGNAAAVFQRCNLLLRRPRSSGYDAILANGRTDPGQNTGFSVHKCIISPTSDFKQSRNAFLGRPWKEYSRSVVMQSRIDSVIAAKGWVAWPGYGSSVLKTLYFAEYGNEGPGAGTSGRVEWKGFHVLKSQDATKFTVASFISGNSWIPSGVNFISGLN 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00542 419 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 79 IPR035513 -
Viun9g00542 419 Gene3D - 109 418 IPR012334 -
Viun9g00542 419 FunFam Pectinesterase 109 418 - -
Viun9g00542 419 ProSitePatterns Pectinesterase signature 2. 254 263 IPR033131 -
Viun9g00542 419 PANTHER PECTINESTERASE 3 409 - -
Viun9g00542 419 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 3 78 IPR035513 -
Viun9g00542 419 Pfam Plant invertase/pectin methylesterase inhibitor 2 74 IPR006501 GO:0004857
Viun9g00542 419 Pfam Pectinesterase 115 405 IPR000070 GO:0030599|GO:0042545
Viun9g00542 419 CDD PMEI-like_3 1 79 - -
Viun9g00542 419 SUPERFAMILY Pectin lyase-like 112 410 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00542 Viun-Chr9 3992335 3994086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00542 22 418 Carbohydrate Esterase AT2G45220 50.498 1.89e-125 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00542 K01051 - gmx:100795439 629.017