Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00535 ATGATGTTCCATTCTCAGGGTGTGTCAAGACATTGTAGTCTTCTTGCTGTTCTGAGTGGTAAATCACGTGACATTAAACAGAAGCAGAAGCAGAGTGCTGCTTCTGAGGATCAACCACCTTATCCCTTTCCAGAGCTTTCTTCCTCTGGCAGTCTTGAGGTCAAGTTATTGATCAAACCTAGTACCGATGAACTTGGTCGGGCTCTTGAACAACTGCAACCAGATTTTGTTTACCTGCAAGGTCAGCTGCTAGAAGATAGGGGAGAAATTGGGACCCTTGCATGGGATTTTGACCTGTCTTCCCCAGAAACATTGTGTGGATTATTTGGTTCCAAATTACCTAATACAGTTTATTTGGAAACTCCTAAGGGAGAGAAATTGGCGGAGGCACTCCGTAATAAGGGAGTTCCATACACTATCTATTGGAAAAATGATTTTTCAAAGTATGCAGCTTCACATTTTCGTCATTCTTTTTTCTCTGTAGCACAGAGTACATCCAGCCATACATGGGATGCTTTCCAGCTTGCTCTAGCATCTTTTAGACTATACTGTATACAAAACAATGTCTTACCTTCTAACAGCCATAAGGGTGCTGGTAAGTTTGGGCCACAAATTTTTGGGGTTCCTCCCAATATTGATACCAGTCCAAGTGTAGCAGATATGAAGGAAGAAGAAGAGGAAAATTCACCTGAGACTATTTCTGCTGTAAAGATATACGATGATGATGTGAACATGAGATTTCTTGTTTGTGGAGTTCCCTGCACATTGGATGCTTGCTTGTTGGGAGCGTTAGAGGATGGACTCAATGCTCTTCTATTTACAGAAATACGGGGATGCAAACTTCACAACAGGACTAGTGCTCCACCACCACCTCTGCAGGCAGGAACATTCTCACGTGGTGTAGTGACTATGCGTTGTGATATATCCACATGTAGTACTGCTCATATATCACTTTTGGTGTCTGGTAGTGCAGACACTTGTTTTAATGATCAGCTTTTGGAGAATCACATTAAGAAAGAGCTCATTGAGAAGAGTCAACTTGTTCAGGCATTTCCTAATCATGAACAAAGTAAATCACCTTCCTTGGAGCCTCGAAGATCAGCCTCAGTAGCCTGTGGATCTAGTGTGTTTGAAGTTTGTATGCGAGTTCCTGCATGGGCTTCACAGGTTCTGAGACAGCTTGCATCCAATGTGTCATACCGCAGCCTTGTTATGTTGGGAATTGCTAGCATTCAGGGATTGCCAGTTGCATCTTTTAATAAAGATGATGCTGAGCGCCTCCTTTTTTTTTGTACTAAGCCAGAGAAAGAAAACTGTCGCAACGAGCCAGTTTTCTCTGCGATTCCAAGTTGGCTGAAGCCTCCACCGGCCAGCCGGAAAAGATCTGAACCATGCTCTAGTTCAAAGTCTATGAATCCTAGTGGCCGGGGAATTGAAGATGTTGGTAGTCATAGACAGAAATTAAATCTTGCTGCTATGAGACCAATTCCTCAATCTCATAGACACAAGATTCTCCCTTTTTCTGGATTGTCTGGGGGTGCAAGATATGATGGAGACCATGGAAAATCAAATCAGCCGCTTGCTCCTATTAAGCATAATGTTTCAGGCCCTACTTCGGTTACAAACAGGAAATCTGTGTCGAACTCATTTCAAGCCAACCAGATTATTTCTTTGAATCCACTACCTATGAAAAAGCATGGTTGTGACAGAGCTCCAATACGAGTTTGCTCAGAGGAGGACTTCCTGAGGGATGTAATGCAGTTTTTGATCCTTCGGGGACATAATCGTCTAATTCCGCCAGGTGGACTTGCCGAGTTCCCTGATGCCATTTTGAATGCAAAACGCCTTGACCTGTTCAACTTGTACAGGGAGGTGGTTTCAAGAGGAGGTTTTCATGTTGGAAATGGTATCAATTGGAAAGGACAAGTTTTCTCAAAGATGCGGAATCACACTTTGACAAATAGAATGACTGGTGTTGGCAATACACTCAAAAGACATTACGAAACTTATCTCTTAGAATATGAATTAGCTCATGAGGATGTAGATGGAGAGTGCTGCTTGATGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAACTGTGGCGTATGTGGTGAGTGGGCTCATTTTGGCTGTGATCGGCGGCAGGGACTTGGAGCATTTAAGGACTATGCAAAAACCGATGGACTGGAATACGTTTGTCCTCGCTGCAGTGCCTTAAAGTTCAGTAAAAAATCTCAAAAAACTGCAAACGGTTACTAA 2259 0.4316 MMFHSQGVSRHCSLLAVLSGKSRDIKQKQKQSAASEDQPPYPFPELSSSGSLEVKLLIKPSTDELGRALEQLQPDFVYLQGQLLEDRGEIGTLAWDFDLSSPETLCGLFGSKLPNTVYLETPKGEKLAEALRNKGVPYTIYWKNDFSKYAASHFRHSFFSVAQSTSSHTWDAFQLALASFRLYCIQNNVLPSNSHKGAGKFGPQIFGVPPNIDTSPSVADMKEEEEENSPETISAVKIYDDDVNMRFLVCGVPCTLDACLLGALEDGLNALLFTEIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTCSTAHISLLVSGSADTCFNDQLLENHIKKELIEKSQLVQAFPNHEQSKSPSLEPRRSASVACGSSVFEVCMRVPAWASQVLRQLASNVSYRSLVMLGIASIQGLPVASFNKDDAERLLFFCTKPEKENCRNEPVFSAIPSWLKPPPASRKRSEPCSSSKSMNPSGRGIEDVGSHRQKLNLAAMRPIPQSHRHKILPFSGLSGGARYDGDHGKSNQPLAPIKHNVSGPTSVTNRKSVSNSFQANQIISLNPLPMKKHGCDRAPIRVCSEEDFLRDVMQFLILRGHNRLIPPGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLMCHSSAAGDWVNCGVCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPRCSALKFSKKSQKTANGY 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00535 752 SUPERFAMILY FYVE/PHD zinc finger 672 738 IPR011011 -
Viun9g00535 752 Gene3D - 573 678 IPR036431 GO:0003677
Viun9g00535 752 CDD PHD_ARID4_like 685 736 - -
Viun9g00535 752 MobiDBLite consensus disorder prediction 528 544 - -
Viun9g00535 752 MobiDBLite consensus disorder prediction 26 48 - -
Viun9g00535 752 CDD ARID 577 675 - -
Viun9g00535 752 SUPERFAMILY ARID-like 576 690 IPR036431 GO:0003677
Viun9g00535 752 ProSiteProfiles ARID domain profile. 575 679 IPR001606 GO:0003677
Viun9g00535 752 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 752 IPR042293 -
Viun9g00535 752 Pfam ARID/BRIGHT DNA binding domain 578 675 IPR001606 GO:0003677
Viun9g00535 752 MobiDBLite consensus disorder prediction 523 544 - -
Viun9g00535 752 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 679 742 IPR013083 -
Viun9g00535 752 SMART ARID_2 572 675 - -
Viun9g00535 752 MobiDBLite consensus disorder prediction 451 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00535 Viun-Chr9 3938697 3945249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00535 2 751 ARID Transcription Factor Family AT3G43240 64.987 0.0 984
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun9g00535 ARID 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00535 - - gmx:100808357 1411.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00535 9 3938697 3945249 Viun9g00535 9 3938697 3945249 ECH